FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9183678
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG311010.3386551662634513No Hit
GGGGGT186940.2035567884675399No Hit
GGGTGG171350.18658101906447502No Hit
GTGGGG169630.1847081310995442No Hit
TGGGGG152750.16632769572278122No Hit
GGGGTG152510.16606636251837226No Hit
GGTGGG149470.1627561419291922No Hit
GGGGCG146020.15899947711581353No Hit
GGCGGG141270.15382725744521966No Hit
GGAGGG140680.15318481331771433No Hit
AGGGGG136330.14844814898780204No Hit
GAGGGG132980.14480037300959375No Hit
GCGGGG130810.14243748528639616No Hit
CGGGGG127290.13860459828839816No Hit
GGGCGG125130.1362525994487176No Hit
GGGAGG124270.1353161554662522No Hit
GGGGGC123670.1346628224552298No Hit
GGGGAG119470.13008949137807313No Hit
GTGTGG116780.12716038171198946No Hit
GGGGTT115880.1261803821954559No Hit
GGGGGA115510.12577749350532544No Hit
GGGTTG111690.12161794000181626No Hit
GGGTGT111540.12145460674906068No Hit
GTGGGT106740.11622794266088161No Hit
GTTGGG104090.1133423885288661No Hit
TGTGGG102660.11178527818592943No Hit
GGTTGG102170.11125172289359447No Hit
TGGGGT101340.11034794556168019No Hit
GGTGGT100830.10979261250231116No Hit
TTGGGG99380.10821372439234042No Hit
GGATGG93270.10156061656342917No Hit
TGGTGG93120.10139728331067356No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)