FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12560633
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG399880.31835975145520135No Hit
GTGGGG258600.20588134371890332No Hit
TGGGGG258170.20553900428425861No Hit
GGGTGG240380.19137570534860782No Hit
GGTGGG213840.17024619698704674No Hit
AGGGGG209980.16717310345744515No Hit
GAGGGG199190.15858277206252266No Hit
CGGGGG192860.1535432171292641No Hit
GGGGGC184880.1471900341328339No Hit
GCGGGG182370.14519172720037277No Hit
GGGGGT172960.1377000665491938No Hit
GGGGGA172790.13756472305177614No Hit
TTGGGG171560.13658547304104818No Hit
GTTGGG170530.135765450674341No Hit
GGGCGG170420.13567787547012958No Hit
TGTGGG166850.13283566202435818No Hit
GGCGGG161720.1287514729552245No Hit
GGGGAG161450.12853651563579638No Hit
GGGGTG161330.1284409790493839No Hit
TGGTGG159790.12721492619042368No Hit
TGGGTG153610.12229479199018076No Hit
ATGGGG148000.11782845657539712No Hit
GTGTGG146840.11690493624007643No Hit
GGGGCG144300.1148827451610122No Hit
AGGTGG135590.10794838126390605No Hit
GGGTTG134820.10733535483442593No Hit
TAGGGG134460.10704874507518848No Hit
GTGGTG133110.10597395847804804No Hit
GTGGGT132760.10569531010101163No Hit
AGGGTG132190.10524151131555233No Hit
GGAGGG130870.104190608865015No Hit
GGGTGT129260.1029088263306475No Hit
GTAGGG128420.10224007022576012No Hit
TGTTGG128300.10214453363934764No Hit
GGGAGG127230.10129266574383633No Hit
GGTTGG126760.10091848078038741No Hit
TGGGGT125830.10017807223569068No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)