FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18652813
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG835880.44812543823818957No Hit
GCAATT702980.3768761312301796No Hit
CGGGGG438790.2352406578031957No Hit
GGGGGT405660.21747926170706797No Hit
GGGCGG392350.2103436087629249No Hit
GCGGGG379290.20334198386055763No Hit
GTGGGG377780.20253245448823187No Hit
GGCGGG369550.19812025135297287No Hit
GGGGGC360160.1930861581038742No Hit
TGGGGG352760.18911892806731082No Hit
GGTGGG352350.18889912207879853No Hit
GGGTGG345430.18518922588244463No Hit
GGGGTG344980.18494797540724822No Hit
GGGGCG342690.183720278544582No Hit
AGGGGG321210.1722045891952061No Hit
GGAGGG308940.16562649290485032No Hit
GGGGAG307670.1649456304526293No Hit
GAGGGG305280.16366432237325276No Hit
GGGGGA289590.15525272247140418No Hit
GGGAGG288360.15459330450586728No Hit
GGCCGG223950.12006231982275273No Hit
CGGCGG218430.1171029806603433No Hit
CCGGGG212020.11366650166921204No Hit
GGGCCG209660.11240127695484858No Hit
CGTGGG208670.11187052590941646No Hit
CGGTGG208410.11173113674596963No Hit
CGCGGG208210.11162391431254899No Hit
TTGGGG203590.10914707610053241No Hit
CAGGGG202890.10877179758356018No Hit
GTTGGG202370.10849301925666653No Hit
GCCGGG199820.10712593323055349No Hit
CTGGGG198840.10660054330679239No Hit
GGGGTT196470.1053299574707579No Hit
CGGGGT196050.10510479036057456No Hit
TGTGGG192470.10318550880234525No Hit
GGGTGT192460.10318014768067423No Hit
GGTCGG190650.1022097846582175No Hit
GTCGGG190330.1020382287647445No Hit
GTGGGT189130.10139489416422069No Hit
GTGGTG188000.10078908741539414No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)