FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10304327
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG402610.3907193550825784No Hit
GTGGGG234970.22803041867751286No Hit
GGGGGT233490.2265941288548005No Hit
TGGGGG231300.22446880810362482No Hit
GGTGGG221120.21458946324199535No Hit
GGGGTG211570.205321512021115No Hit
CGGGGG184840.17938095326361442No Hit
AGGGGG180800.17546027023404828No Hit
GCGGGG179680.17437334820604974No Hit
GGGTGG179120.17382988719205048No Hit
GGAGGG176030.17083114695409027No Hit
GGGGCG171170.16611468172545377No Hit
GGGGGA166750.1618252215792453No Hit
GGGGGC166380.16146614912356722No Hit
GAGGGG160960.15620622288093147No Hit
GGGCGG160840.15608976694936022No Hit
GGGAGG159420.1547117050924335No Hit
GGGGTT159270.1545661351779694No Hit
GGGGAG153250.14872392927747732No Hit
GTTGGG148960.14456062972380437No Hit
GGTGGT148900.14450240175801873No Hit
TGTGGG147360.14300788396952077No Hit
GGCGGG146090.14177539202705813No Hit
GGTGTG145030.14074669796484524No Hit
GGGTGT139340.13522474587617414No Hit
GGTTGG137280.133225585717534No Hit
GTGGTG134790.13080912513743012No Hit
GTGGGT133140.12920785607832516No Hit
GAGGGT133050.1291205141296467No Hit
GGGTAG132030.1281306387112909No Hit
GGGTTG131250.12737367515607764No Hit
GTGGTT125660.12194876967704926No Hit
TGGTGG123720.12006606544998039No Hit
TGGGTG120350.11679559470502052No Hit
TTGGGG120250.1166985480953778No Hit
GGGGCT118880.11536900954327246No Hit
GTGTGG116710.1132630981140253No Hit
AGTGGG115740.11232174600049087No Hit
GGGGTC112730.10940064305024481No Hit
GTTGTG112690.10936182440638771No Hit
GGGGTA112400.10908038923842381No Hit
GTGGGA112220.10890570534106692No Hit
GGGGAT107960.1047715197702868No Hit
ATGGGG107130.10396603291025217No Hit
CTGGGG106470.10332552528661018No Hit
CGGTGG106380.10323818333793174No Hit
TGTGGT105020.10191834944679067No Hit
GTGGCG104710.1016175049568982No Hit
GGCCGG103720.10065674352143522No Hit
GGGTCG103680.10061792487757813No Hit
TGGGCG103430.10037530835347132No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)