FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8076362
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG708890.8777343066098324No Hit
GGGGGT308240.3816569886292863No Hit
TGGGGG307640.38091407987903464No Hit
GTGGGG272340.3372062817392286No Hit
CGGGGG268310.3322164113000383No Hit
GGTGGG267460.3311639572371818No Hit
GGGGTG264360.3273255953608815No Hit
GGGGCG254240.31479520110663683No Hit
GGGTGG251130.31094445741783244No Hit
GCGGGG244090.3022276614148796No Hit
GAGGGG229370.28400163340870554No Hit
AGGGGG224390.27783549078161673No Hit
GGGGAG223210.27637443690612185No Hit
GGCGGG220910.27352662003015715No Hit
GGAGGG214260.26529271471486787No Hit
GGGGGC212680.2633363883392052No Hit
GGGAGG210350.2604514260257279No Hit
GGGCGG209510.2594113537753756No Hit
GGGGGA161780.200312962692856No Hit
GGGTGT138860.17193384843324258No Hit
TTGGGG138650.1716738303706545No Hit
TGGGGT135450.16771165036931232No Hit
GGGGTT135450.16771165036931232No Hit
GGTGGT135100.16727828693166552No Hit
GGGTTG130790.16194172574235777No Hit
CCGGGG129970.16092641711701383No Hit
GTGGGT128990.15971299949160278No Hit
TGTGGG128250.15879674536629237No Hit
CGGGGT125310.15515649249005925No Hit
CTGGGG124420.15405451117718597No Hit
GTTGGG122720.15194960305147293No Hit
GTGGTG122000.15105811255117094No Hit
CAGGGG121440.15036473105093606No Hit
TCGGGG120490.1491884588630376No Hit
GCCGGG118940.14726927792488748No Hit
GGGGCT117960.14605586029947643No Hit
GGTTGG117620.1456348786743338No Hit
TGGTGG116870.14470624273651922No Hit
GCTGGG114800.14214320754815102No Hit
GGGCCG114670.14198224398559647No Hit
GTCGGG114330.14156126236045388No Hit
GGGTCG114120.1413012442978658No Hit
GGCTGG112550.13935729973470729No Hit
TGGGTG111710.13831722748435496No Hit
TGGGCG111650.1382429366093298No Hit
TAGGGG111400.13793339129672494No Hit
GTAGGG110930.1373514461090278No Hit
CGGTGG110690.13705428260892713No Hit
GGCGGT110360.13664568279628872No Hit
GGGGTC110300.13657139192126355No Hit
GCGGGT109430.13549417423339866No Hit
GGGGCC109370.1354198833583735No Hit
GGTGTG109050.1350236653582393No Hit
GTGGCG107740.13340164792018983No Hit
GGCCGG106250.13155675785706486No Hit
GTGGAG106100.13137103066950193No Hit
GCGGTG105840.1310491035443929No Hit
CGGCGG105060.13008332216906573No Hit
GGGTAG104830.12979854048146927No Hit
TGGAGG103600.12827557754345334No Hit
AGGGGT102980.1275079051681933No Hit
TGGGGC102910.12742123248066395No Hit
TGCGGG102760.12723550529310101No Hit
GTGCGG102680.12713645079306748No Hit
ATGGGG102440.1268392872929668No Hit
CGCGGG102120.12644306929283258No Hit
GGGCAG102010.12630686935528646No Hit
GCAGGG102000.12629448754278227No Hit
CGGGCG101670.12588588773014384No Hit
CGTGGG100860.12488296091730411No Hit
GGGATG99960.1237685977919266No Hit
GTGTGG99540.12324856166675045No Hit
GGTAGG99120.12272852554157429No Hit
GTGAGG98980.12255518016651558No Hit
TGGGAG98970.12254279835401138No Hit
GAGGTG98760.12228278029142328No Hit
ACGGGG98350.12177512597875133No Hit
GCGCGG98280.12168845329122197No Hit
GATGGG97900.1212179444160626No Hit
GGTCGG96900.11997976316564314No Hit
CGGGGC96630.1196454542280299No Hit
GGTGAG96620.1196330724155257No Hit
GGGCTG96560.11955878154050054No Hit
GGGAGT96550.11954639972799634No Hit
TGAGGG95890.11872920010271952No Hit
CGGGTG95590.11835774572759368No Hit
GCGGCG94660.1172062371647036No Hit
GGGCGT94420.11690907366460296No Hit
GCGTGG93730.11605472860181354No Hit
CGGGAG93370.11560898335166254No Hit
TGGCGG92980.11512609266399897No Hit
GGGGAT92700.11477940191388153No Hit
AGTGGG92430.11444509297626829No Hit
AAGGGG92180.11413554766366342No Hit
GGAGGT92110.11404887497613406No Hit
GGTGCG92020.11393743866359632No Hit
GGCGCG91160.11287260278823559No Hit
GGCAGG90820.11245162116309299No Hit
GGGGTA90630.11221636672551329No Hit
GAGGGT90600.11217922128800072No Hit
GCGAGG90320.11183253053788328No Hit
GGATGG89820.11121343991267355No Hit
GAAGGG89510.11082960372504352No Hit
GAGGCG88720.10985144053721219No Hit
GGGCGC88410.10946760434958215No Hit
GGTGGC86230.10676836922366778No Hit
GCGGGC85900.10635976941102937No Hit
GGCGGC85470.10582735147334901No Hit
GGGGAC85440.10579020603583643No Hit
GAGCGG83710.10364815247261082No Hit
GAGTGG83670.10359862522259403No Hit
AGGTGG83670.10359862522259403No Hit
CGGAGG82790.10250902572222494No Hit
GGGACG82350.10196422597204038No Hit
GGGAAG81950.10146895347187261No Hit
AGGGCG81860.10135751715933486No Hit
GGCGAG81650.10109749909674678No Hit
GGAGTG81460.10086224465916709No Hit
GGAAGG81290.10065175384659578No Hit
GAGGGC81190.10052793572155384No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)