FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483889

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483889
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12569719
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG536760.42702625253595566No Hit
GGGGGT321260.2555824835861486No Hit
TGGGGG313280.2492338929772416No Hit
GTGGGG309940.2465767134492028No Hit
GGGTGG296160.2356138589892105No Hit
GGTGGG293870.23379202033076474No Hit
GGGGTG277630.22087208154772595No Hit
CGGGGG236250.1879516956584312No Hit
AGGGGG233960.18612985699998544No Hit
GCGGGG230910.18370339066450095No Hit
GGGGGC226030.17982104452772574No Hit
GGCGGG224160.1783333422171172No Hit
GGGCGG222920.17734684442826446No Hit
GAGGGG218610.17391796904926832No Hit
TTGGGG205910.16381432234085744No Hit
GGGGGA202920.16143558976934966No Hit
GGTGGT200500.15951032795562095No Hit
GGAGGG199650.15883409963261708No Hit
GGGGCG198000.1575214211232566No Hit
GGGGAG195610.1556200261915163No Hit
GGGAGG195280.1553574904896442No Hit
TGGTGG191980.15273213347092326No Hit
TGGGGT189140.15047273530935734No Hit
TGTGGG186950.1487304529242062No Hit
GGGTGT183670.14612100716014415No Hit
GGGGTT183600.14606531776883797No Hit
TGGGTG181770.14460943796754724No Hit
GTGGGT175470.13959739274998909No Hit
GTTGGG174470.13880183001704335No Hit
GGTGTG171530.13646287558218287No Hit
GTGTGG169090.13452170251379525No Hit
TAGGGG168900.13437054559453557No Hit
GGGTTG167860.13354316035227198No Hit
GGTTGG165810.13191225674973323No Hit
GTGGTG161700.12864249391732624No Hit
GGGGTA156010.12411574196686498No Hit
AGGGGT144050.1146008116808339No Hit
TGCGGG142040.11300173058761298No Hit
TCGGGG141750.11277101739505871No Hit
TGAGGG140290.11160949580495794No Hit
ATGGGG138190.10993881406577187No Hit
GGGGCT138140.10989903592912459No Hit
GGGCTG137880.1096921896185587No Hit
CGGGGT136610.10868182494771761No Hit
GCGGGT136090.10826813232658582No Hit
TTTGGG135540.10783057282346567No Hit
GTCGGG132820.10566664218985325No Hit
GGCGGT131870.1049108575935548No Hit
GTAGGG131690.10476765630162456No Hit
GGTAGG131040.10425054052520984No Hit
GGGGAT129740.10321630897238036No Hit
AGGTGG129400.10294581764317882No Hit
GGTCGG129040.10265941505931836No Hit
GGGCGT128880.10253212502204703No Hit
GAGGGT128640.10234118996614006No Hit
GGGTGC127860.10172065103444237No Hit
TTGGGT127530.10145811533257029No Hit
GTGGTT127390.10134673654995788No Hit
TGGCGG127180.10117966837603926No Hit
GGGGTC126780.10086144328286097No Hit
TGGGCG126290.10047161754371756No Hit
GTGCGG126080.10030454936979895No Hit
GGCTGG125960.10020908184184547No Hit
AGGGTG125890.10015339245053925No Hit
GGGTTT125780.10006588054991523No Hit
TTGGTG125740.10003405804059741No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)