FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13368855
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG629380.470780781151415No Hit
TGGGGG388880.2908850458771525No Hit
GGGGGT378580.28318057155979326No Hit
AGGGGG334910.2505150964686205No Hit
GGGAGG309510.23151571320056955No Hit
GGGGAG308870.2310369885827919No Hit
GGAGGG285650.21366826104404604No Hit
GGGTGG284520.21282301289078231No Hit
GGTGGG274040.20498389727467312No Hit
CGGGGG263250.19691289942182783No Hit
GGGGGA263110.19680817841168896No Hit
GTGGGG251300.18797421319926053No Hit
TGGGGT244740.18306728586703946No Hit
TTGGGG229460.17163773561759776No Hit
TGGTGG223510.16718709268669607No Hit
GGGGCG222410.16636428474989068No Hit
ATGGGG216400.1618687613860723No Hit
GGGTTG216180.16170419979871126No Hit
GGGCGG212210.1587346111540592No Hit
GAGGGG210310.15731339744503176No Hit
GGGGTT208440.15591462395246264No Hit
AGGGGT202550.1515088614544776No Hit
GTAGGG201920.1510376169088527No Hit
GTTGGG201810.15095533611517217No Hit
GGGTAG198820.14871879454149214No Hit
GGGGTG198440.14843455179968665No Hit
GGTTGG192850.14425319146628487No Hit
GGATGG191370.14314614078767404No Hit
GGAGGT184950.13834393446559184No Hit
GGGTGT184070.13768568811614756No Hit
GGTGGT182450.13647391642739787No Hit
AGGTGG180030.13466373896642606No Hit
TGGGTG179250.13408029333850954No Hit
TGTGGG179220.1340578531220512No Hit
TAGGGG178680.1336539292258013No Hit
TGAGGG177470.13274884049531543No Hit
TGGAGG175250.13108826447739916No Hit
GTGGGT169190.1265553407528169No Hit
GGTAGG169150.1265254204642058No Hit
GTGGAG167520.1253061687033033No Hit
TGGGGA167330.12516404733240058No Hit
GGGATG166890.12483492415767844No Hit
CTGGGG166660.12466288249816458No Hit
GGGGTA164630.12314442785115104No Hit
GGGGAT162690.1216932938535125No Hit
GGGAGT162210.12133425039017925No Hit
AAGGGG160400.1199803573305268No Hit
GGCGGG160300.11990555660899906No Hit
CGGGGT157930.11813277950879113No Hit
GCGGGG157930.11813277950879113No Hit
GTGTGG157400.11773633568469401No Hit
GGGGAA156680.11719777048969414No Hit
TGGGAG155760.11650960385163876No Hit
GAGGGT153390.11473682675143083No Hit
GGGTTT151430.11327073260948674No Hit
TTTGGG149780.1120365207042787No Hit
GGAAGG148990.11144559500420942No Hit
GTGGTG148870.1113558341383761No Hit
TTGGGT148220.11086962944844565No Hit
GGCTGG147920.11064522728386238No Hit
TGGTTG147230.11012910230532083No Hit
GGGGCT146540.10961297732677928No Hit
TCGGGG144970.10843860599879347No Hit
GTTTGG144640.10819176361775186No Hit
TTGTGG143480.10732407524802984No Hit
GTGTTG142190.10635914594032173No Hit
GGGAAG142090.10628434521879399No Hit
AGAGGG139300.10419740508816949No Hit
GTATGG139090.1040403235729612No Hit
TGGTGT139030.10399544314004454No Hit
AGTGGG138810.10383088155268345No Hit
AGGGGA138220.10338955729566968No Hit
AGGAGG137580.102910832677892No Hit
GGTTGT137260.10267147036900318No Hit
ATGTGG137220.10264155008039208No Hit
TGGGTT136470.10208054466893388No Hit
GGGCGT136190.10187110264865615No Hit
TGTTGG136000.10172898127775341No Hit
GTGAGG135810.10158685990685067No Hit
CAGGGG135290.1011978961549063No Hit
AGGGTG134650.10071917153712864No Hit
GGGTAT134300.10045736901178148No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)