FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18425763
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG441730.23973498410893487No Hit
GGGTGG287660.1561183653561592No Hit
GTGGGG280850.15242245327913964No Hit
TGGGGG278960.15139671556613424No Hit
GGGGGT278620.15121219132146657No Hit
GGCGGG261230.14177431892508333No Hit
GGGGTG260940.14161693059874916No Hit
GGTGGG245400.13318308718070454No Hit
AGGGGG236110.12814123355434454No Hit
CGGGGG235380.12774504914667578No Hit
GGGCGG228080.12378320506998815No Hit
GCGGGG227100.123251341070652No Hit
GGGGGC225980.12264349649998212No Hit
GGGGCG210320.11414452687793716No Hit
GTGTGG210250.11410653659227028No Hit
GGAGGG207500.11261406108392907No Hit
GAGGGG207310.11251094459426185No Hit
GGGGGA202280.10978107120991408No Hit
GGGGTT200340.10872819757857517No Hit
TGGTGG195570.1061394309695615No Hit
GGGTGT194630.10562927570489211No Hit
GGGGAG193810.10518424664422309No Hit
GGTGGT190730.10351267407488092No Hit
GGGTTG188010.10203648011753977No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)