FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18637397
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG479510.25728378270849733No Hit
GGGTGG364050.19533307145842307No Hit
GGGGGT341990.18349665460257136No Hit
GTGGGG338150.18143628104289455No Hit
GGGGTG309810.16623029492798808No Hit
GGTGGG308490.16552204151684916No Hit
TGGGGG288120.15459240364950105No Hit
GTGTGG253410.13596855827023485No Hit
GGGTGT252390.1354212715434457No Hit
GTGGGT242920.13034008987413856No Hit
GGGCGG239570.1285426285655663No Hit
GGTGGT231880.12441651589006769No Hit
GGCGGG230380.12361168246831894No Hit
GGGGTT230030.12342388800324422No Hit
GGGTTG225410.12094500106425807No Hit
GGGGGC221380.11878268193782641No Hit
TTGGGG218430.11719984287505386No Hit
TGGTGG214620.11515556598381202No Hit
GGTTGG214500.11509117931007211No Hit
CGGGGG214100.11487655706427244No Hit
GCGGGG211710.11359418914561942No Hit
GTGGTG210390.11288593573448051No Hit
GGGAGG209710.1125210779166211No Hit
GGGGCG208410.11182355561777217No Hit
TGGGGT205050.11002072875305495No Hit
GGGGAG203780.109339303122641No Hit
GGGTTT203180.1090173697539415No Hit
TGGGTG202610.10871153305367696No Hit
GTTGGG201440.10808376298471294No Hit
GTTTGG201140.10792279630036318No Hit
GTGTTG200280.10746135847189389No Hit
TGTGGG199550.1070696728733095No Hit
GAGGGG198930.10673700839232002No Hit
TTGTGG197720.10608777609877602No Hit
GGTGTG194840.1045424959290184No Hit
GTGTGT194540.10438152924466867No Hit
GGGGGA194470.10434397035165373No Hit
TTTGGG191200.10258943349224144No Hit
GTGGTT190340.10212799566377215No Hit
GGAGGG189310.101575343380838No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)