FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9963001
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG305330.30646388573081546No Hit
GGGGTG188800.18950113525031265No Hit
TGGGGG185760.18644984578441778No Hit
GCAATT176770.1774264601599458No Hit
GGGTGG174910.17555955278936536No Hit
GTGGGG170800.17143428972856672No Hit
GGGGAG164320.1649302253407382No Hit
GGGGGT161150.16174845310163072No Hit
GGTGGG157360.1579443784056631No Hit
GGGGGC154380.15495331175817406No Hit
GCGGGG147500.14804776191430674No Hit
GAGGGG147040.14758605363986213No Hit
GGAGGG144550.14508680667602059No Hit
CGGGGG140140.14066042952319285No Hit
AGGGGG139150.13966675301949683No Hit
GGCGGG135630.13613368100635542No Hit
GGGCGG129770.13025191907538702No Hit
GGGGCG127530.12800360052156975No Hit
GGGAGG127500.12797348911236683No Hit
GGGGGA124270.12473149405485355No Hit
GGGGTT121260.12171031599816161No Hit
TGTGGG120300.12074675090366849No Hit
TGGTGG119790.12023485694721901No Hit
GGTGGT118880.11932147753473075No Hit
GGGTGT116470.11690252766209701No Hit
TAGGGG115470.115898814022No Hit
TGGGTG112870.11328915855774781No Hit
TGCAAT112620.11303823014772356No Hit
GGGTTG112460.11287763596530805No Hit
GTTGGG112190.11260663328248185No Hit
GGGGAT108730.10913378408774624No Hit
GTGGTG108590.10899326417813267No Hit
GTGGGT107230.10762821362760076No Hit
GGGGTC105100.10549030357419416No Hit
TTGGGG103920.10430592147887971No Hit
TGGTTG102850.10323194788397591No Hit
TGGGGT101130.10150556042300908No Hit
TGGGGC99720.10009032419047233No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)