FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4572055
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG162880.3562511824551542No Hit
GGGGGT107430.23497092664020885No Hit
GAGGGG106610.2331774224063359No Hit
CGGGGG96400.21084610749433239No Hit
GGGGTG91380.1998663620625736No Hit
GGGCGG89710.1962137375862714No Hit
GGGGCG85190.18632759229711804No Hit
TGGGGG81930.17919731936733044No Hit
GGGGAG81100.17738194313060537No Hit
GCGGGG78130.17088595828352895No Hit
GGGTGG77920.17042664622363468No Hit
GGTGGG75710.16559293359331853No Hit
GGGGTT75500.16513362153342423No Hit
GGAGGG74940.16390878937370615No Hit
GGCGGG69290.15155110776226446No Hit
GGGGGA68730.15032627560254633No Hit
GTGGGG67810.1483140513401523No Hit
AGGGGG67710.14809533131163122No Hit
CGGTGG63920.13980584223068182No Hit
GGGAGG62860.13748740992835826No Hit
TTGGGG58910.12884796880177515No Hit
GGGGGC58760.12851988875899348No Hit
GGTGGT57220.12515160031976869No Hit
TGGGGT57100.12488913628554336No Hit
GGGGTA54320.11880871949265703No Hit
TGGCGG54300.1187649754869528No Hit
GTCGGG53010.11594348711903071No Hit
GGCAGG51900.1135156948024466No Hit
CGGGGT50800.1111097744887146No Hit
ATGGGG50140.1096662223004754No Hit
GGTCAC48360.10577300579279997No Hit
GTAGGG47960.10489812567871558No Hit
GGTCGG47810.10457004563593396No Hit
TGTGGG47620.10415447758174388No Hit
CTGGGG47550.1040013735617791No Hit
GAGGCG47320.1034983174961806No Hit
GCTTGG46860.10249220536498359No Hit
GGGGCT46700.10214225331934984No Hit
AGTGGG46590.10190166128797662No Hit
GGGTGA46540.1017923012737161No Hit
GTGGAG46360.10139860522237812No Hit
CCCGGG46060.10074244513681484No Hit
GGGGCC45980.10056746911399797No Hit
GGACGG45980.10056746911399797No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)