FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16182038
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG520970.3219433794433062No Hit
TGGGGG347520.2147566332497798No Hit
GTGGGG340210.21023927888440255No Hit
CGGGGG295440.18257280078071747No Hit
GGGTGG295430.18256662108938318No Hit
AGGGGG275090.16999712891540608No Hit
GGTGGG274540.16965724589201928No Hit
GAGGGG243370.15039514800298948No Hit
GCGGGG241120.14900471745277077No Hit
GGGGTG234490.14490758209812632No Hit
GGGGAG231450.1430289559324975No Hit
GGCGGG228840.14141605649424382No Hit
GGGGGA226890.14021101668405425No Hit
TGGTGG225590.13940765681059458No Hit
GGGGCG224810.13892564088651876No Hit
GTTGGG224250.13857957817179764No Hit
GGGGGT222470.13747959311429128No Hit
GGGCGG221910.13713353039957019No Hit
TTGGGG216970.13408076288042334No Hit
TGGGTG212180.1311206907312911No Hit
TGTGGG209600.12952633036704028No Hit
GGGGGC205010.12668985204459413No Hit
GGAGGG202670.1252438042723667No Hit
GTGGTG194830.12039892626627129No Hit
GTGTGG193060.11930512090009923No Hit
CTGGGG187210.1156900014695306No Hit
GGGAGG184990.11431810999331482No Hit
ATGGGG182810.11297093728243623No Hit
TAGGGG182080.11251981981503195No Hit
GTAGGG174790.10801482483232334No Hit
CGGTGG170690.10548115138525815No Hit
CGGGTG169420.10469633058580137No Hit
TGGGGT168200.10394240824301612No Hit
AGGGTG167860.10373229873764975No Hit
AGTGGG162090.10016661683775555No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)