FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10230037
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG227940.22281444338862116No Hit
GGGGTG166410.16266803336097416No Hit
GGTGGG164040.16035132619754944No Hit
GGGGGT163880.160194924026179No Hit
TGGGGG162090.15844517473397213No Hit
GGGTGG151250.14784892762362442No Hit
GTGGGG147110.14380202143941415No Hit
GGGGTT128220.12533679008199092No Hit
TTGGGG128070.1251901630463311No Hit
TGGGTG122870.12010709247679163No Hit
GGGTTG120710.11799566316329062No Hit
AGGGGG119500.11681287174230162No Hit
GGGCGG118140.11548345328565282No Hit
GGTTGG116900.11427133645753187No Hit
GGCGGG116670.11404650833618686No Hit
TGTGGG116510.11389010616481642No Hit
GGTGTG115590.11299079367943635No Hit
CGGGGG115040.11245316121535043No Hit
GTGGTG112830.11029285622329615No Hit
GTGTGG111400.10889501181667281No Hit
GTGGGT110890.10839647989542951No Hit
GGAGGG110280.1078001966170797No Hit
GGGTGT110040.10756559336002401No Hit
GTTGGG108910.10646100302472024No Hit
TGGTGG108730.10628505058192848No Hit
TGGGGT105870.10348936176868177No Hit
GGGGCG104080.10173961247647492No Hit
GGGGAG103690.10135838218375945No Hit
GAGGGG103480.10115310433383574No Hit
GGGAGG103450.1011237789267038No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)