FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13666639
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG749470.5483937930898738No Hit
GGGGTG378380.2768639751148765No Hit
GGGGGT378370.2768566580268931No Hit
GTGGGG347840.25451758841365457No Hit
GGGTGG344350.2519639247074573No Hit
CGGGGG316420.23152729796989588No Hit
GCGGGG313740.22956631839035185No Hit
TGGGGG312310.22851997480872946No Hit
GGTGGG312010.2283004621692283No Hit
AGGGGG306410.2242028928985393No Hit
GGGAGG293520.21477116648797118No Hit
GAGGGG283820.20767359114409914No Hit
GGCGGG278700.20392724209661203No Hit
GGGGGA273530.2001443076092081No Hit
GGGGAG265520.19428332013452615No Hit
GGAGGG258700.18929306612986557No Hit
GGGGGC246180.18013207197468228No Hit
TGTGGG200280.14654663813099916No Hit
TGGTGG191350.14001247856184684No Hit
TTGGGG189210.13844662173340497No Hit
GGGTTG184030.13465637015801765No Hit
GGTGGT183310.13412953982321477No Hit
GGGGTT178970.13095392363843078No Hit
GGTTGG178680.13074172808691295No Hit
GGGTGT178640.13071245973497947No Hit
ATGGGG174690.12782220998154703No Hit
TGGGGT172850.12647586579260636No Hit
GTGTGG172300.12607342595352083No Hit
TAGGGG171460.12545879056291748No Hit
AGGGGT170610.12483683808433076No Hit
GGGTAG169730.12419293434179392No Hit
AGTGGG169180.12379049450270839No Hit
GGTAGG168780.12349781098337347No Hit
GTAGGG168760.12348317680740671No Hit
GTTGGG166580.12188805162703135No Hit
GGATGG166500.12182951492316436No Hit
TGGGTG161570.11822219054736134No Hit
GGGGTA161560.11821487345937798No Hit
GGCTGG161460.11814170257954425No Hit
GTCGGG161050.11784170197222593No Hit
GGAGGT159940.11702950520607151No Hit
GGGCGG157400.11517096485829473No Hit
AAGGGG156510.1145197440277745No Hit
AGGGGA153490.11230998345679577No Hit
GGTGTG152540.11161486009837532No Hit
GAAGGG151900.11114656646743944No Hit
AGGTGG150320.10999046656606647No Hit
TCGGGG149820.1096246121668978No Hit
CGGGGT149770.10958802672698094No Hit
TGGGGA149630.1094855874952137No Hit
GGGGCT149300.1092441235917624No Hit
GGGGCG149050.10906119639217807No Hit
CGGTGG147910.10822704836207353No Hit
ACGGGG147050.10759777879550342No Hit
TGCGGG146870.1074660712118027No Hit
CGTGGG146090.10689533834909958No Hit
GATGGG144040.10539533531250807No Hit
GGTGGA144000.10536606696057457No Hit
GGGTGA143310.10486118788972183No Hit
TGGGAG140900.10309776968572888No Hit
GTGAGG140380.10271728111059346No Hit
GGTCGG140240.10261484187882625No Hit
GGGGAA139570.10212459698394025No Hit
AGCGGG139540.10210264571999011No Hit
GTGGGT139470.1020514261041065No Hit
GCGGGT139110.10178801093670506No Hit
GACGGG137210.10039776421986416No Hit
GTGGGA136820.1001123977885126No Hit
GGTGAG136810.10010508070052923No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)