FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11465770
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG266710.2326141201157881No Hit
GGGGGT172240.1502210492622824No Hit
GTGGGG160560.14003420616321452No Hit
GGGTGG159710.13929286912261452No Hit
GGGGTG158440.13818522436783576No Hit
GGTGGG155700.13579550261343112No Hit
GCGGGG154390.1346529714096829No Hit
CGGGGG145520.12691690135071607No Hit
TGGGGG145140.12658548008550669No Hit
GAGGGG142960.12468416861667381No Hit
GGGCGG142190.12401260447401266No Hit
GGCGGG139950.12205896333172565No Hit
GGGGGA128850.11237797374271417No Hit
GGGAGG125670.10960450104964604No Hit
GGGGGC125010.10902887464165076No Hit
AGGGGG124360.10846196984589784No Hit
GGAGGG123660.10785145698893316No Hit
GGGGCG122010.10641239096894496No Hit
GGGGAG115900.10108348588886748No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)