FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9760567
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG383870.3932865785358576No Hit
GTGGGG215970.2212678833104675No Hit
GGGTGG212210.21741564808683758No Hit
GGGGGT209120.21424984839507788No Hit
GGTGGG192720.197447545823926No Hit
GGCGGG178500.18287872005796385No Hit
TGGGGG173160.17740772641589367No Hit
GCGGGG168610.17274611198304363No Hit
CGGGGG165100.16915000942055927No Hit
GGGGTG162310.16629156892217428No Hit
GGGCGG156220.1600521772966673No Hit
GGGGGC154280.15806458784617736No Hit
GGAGGG151590.15530860041225064No Hit
GAGGGG149550.1532185578973025No Hit
GGGGCG147790.1514153839628374No Hit
GTGTGG146760.1503601173989175No Hit
AGGGGG145310.14887454796427296No Hit
GGGAGG145140.14870037775469397No Hit
GGGGGA143610.14713284586848285No Hit
GGGGAG133570.13684655819687525No Hit
GGGTGT133220.1364879724712714No Hit
GTGGGT130950.13416228790806928No Hit
GGTTGG127960.1310989412807678No Hit
GTTGGG125590.12867080365310746No Hit
TGGTGG124690.12774872607298327No Hit
GGGTTG122530.1255357398806852No Hit
TTGGGG121380.12435752963941543No Hit
GGTGGT118940.12185767486663428No Hit
TGGGGT114330.11713458859510928No Hit
GTGGTG111640.11437860116118254No Hit
GGGGTT111030.11375363746798726No Hit
GTCGGG109090.11176604801749734No Hit
TGTGGG108320.11097715942116888No Hit
GCGTGG107080.10970674142188666No Hit
GGATGG105250.1078318503423008No Hit
GTAGGG105000.1075757176811552No Hit
CGGGGT104070.10662290418169354No Hit
GTGCGG102460.10497340984391584No Hit
GGGTCG101760.10425623839270812No Hit
GGCGGT100380.10284238610318439No Hit
TGGCGG99210.10164368524902294No Hit
GCGGGT98740.10116215584606919No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)