FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9416774
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG459950.4884369105598159No Hit
GCAATT428620.4551664933235097No Hit
GGGTGG216650.23006817409019267No Hit
GGGCGG216390.22979207104258845No Hit
GGGGGC213930.22717971143833335No Hit
GTGGGG212210.2253531835849517No Hit
GGGGGT206360.2191408650138572No Hit
CGGGGG205640.21837627195895326No Hit
TGGGGG202010.21452144864047923No Hit
GGCGGG195710.20783125941006972No Hit
GGGGTG194830.20689675678740937No Hit
ATCTCG190820.20263839824551383No Hit
GGTGGG188900.2005994834324366No Hit
GCGGGG184360.19577829944734787No Hit
GGGGCG183590.19496060965252004No Hit
GAGGGG180930.1921358630885694No Hit
AGGGGG176600.18753768541116098No Hit
GGAGGG155350.16497157094350995No Hit
GGGGGA144100.15302480446063588No Hit
GGGGAG131810.13997362578734499No Hit
GGGAGG130270.13833824619768936No Hit
GTGTGG118980.12634900232287616No Hit
GGGCTG118470.12580741557565256No Hit
CGGGGT118240.12556317057200267No Hit
GGGTGT114840.12195259225717851No Hit
GGTTGG111360.11825705915847615No Hit
GGGCCG111040.11791724002296329No Hit
GGGGCC110300.11713140827208977No Hit
GGGTTG110010.11682344718053125No Hit
GTTGGG109860.1166641569607596No Hit
CAGGGG109770.11656858282889661No Hit
AGGTGG108520.11524116433079949No Hit
TTGGGG108460.11517744824289082No Hit
GGTCGG107870.11455090671178898No Hit
GGGGCT105230.11174739884380787No Hit
GTGGTG105140.11165182471194487No Hit
GCGCGG104560.11103590252882782No Hit
GGGCGT104120.11056865121749763No Hit
CGGTGG103660.1100801612101979No Hit
GCCGGG103070.10945361967909603No Hit
GTAGGG101650.10794567226525772No Hit
TGGCGG101350.10762709182571442No Hit
GGGGTT100730.10696869225065825No Hit
GGCCGG99480.10564127375256112No Hit
GTGGGT99350.10550322222875902No Hit
GGTGTG98790.10490853874161152No Hit
GTGGGA98480.10457933895408342No Hit
CTGGGG98380.10447314547423565No Hit
GCGTGG97840.10389970068305769No Hit
CGGCGG97560.10360235893948394No Hit
CGGGGC97260.10328377849994064No Hit
TGCGGG97260.10328377849994064No Hit
GGCGGT97190.1032094430640472No Hit
GCGGGC97050.10306077219226033No Hit
GCGGGT96630.1026147595768997No Hit
GGTGGT95000.10088380585538104No Hit
GAGGGT94830.10070327693963983No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)