FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4758249
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG291680.6129986051591667No Hit
TGGGGG136850.2876057978470652No Hit
CGGGGG133280.28010303790322866No Hit
GTGGGG125340.26341622727183883No Hit
GGTGGG120800.2538749023012457No Hit
GGGGGT120420.2530762891979802No Hit
GGGGTG120170.2525508858405687No Hit
AGGGGG118570.24918830435313494No Hit
GGGTGG117010.2459097874028871No Hit
GGGAGG108780.2286135088768999No Hit
GAGGGG105790.22232968472225811No Hit
GCGGGG103930.2184206837431164No Hit
GGAGGG103200.2168865059394748No Hit
GGGGAG102240.21486895704701456No Hit
GGCGGG100520.2112541819480233No Hit
GGGGGA99870.20988813321875335No Hit
GGGGGC96310.20240638940921338No Hit
TTGGGG76710.1612147661881503No Hit
GGGCGG71800.15089584424858807No Hit
GGGGCG69320.14568384294306583No Hit
GGTGGT68010.14293072935022946No Hit
TGTGGG67130.1410813095321409No Hit
GTGTGG66690.14015659962309665No Hit
GGGTTG66480.13971526080287097No Hit
TGGTGG64150.1348185015117956No Hit
TGGGGT63140.1326958719478531No Hit
GGGGTT61410.12906008071456537No Hit
TAGGGG60380.12689541888202993No Hit
GGGTGT60170.12645408006180425No Hit
TGAGGG59530.12510904746683074No Hit
GTAGGG59180.12437348276645463No Hit
GGGGTA59050.12410027302060064No Hit
GGTAGG58190.12229288547110503No Hit
GGTTGG58170.1222508532025121No Hit
TGGGTG58020.12193561118806519No Hit
AAGGGG57540.12092683674183509No Hit
GGGATG56970.11972891708693682No Hit
CAGGGG56730.11922452986382176No Hit
ATGGGG56130.11796356180603411No Hit
GTTGGG55810.11729104550854738No Hit
CGTGGG55350.11632430333091018No Hit
GTGGTG55340.11630328719661372No Hit
TGGAGG54990.11556772249623759No Hit
CGGTGG54960.11550467409334819No Hit
GGTGTG54950.11548365795905176No Hit
TGGGGA54590.11472707712437916No Hit
GTGGGT53830.11312985091784815No Hit
TGCGGG53510.1124573346203614No Hit
AGTGGG53460.1123522539488791No Hit
GTGAGG53270.11195294739724634No Hit
GCGAGG53030.11144856017413127No Hit
GAGGTG52340.10999844690767549No Hit
CGAGGG51550.1083381722982551No Hit
GGTGAG51550.1083381722982551No Hit
GGGTGA51500.1082330916267728No Hit
GATGGG51480.10819105935817987No Hit
AGGGGT51110.10741346238921082No Hit
GGGTAG51050.10728736558343206No Hit
GGATGG50720.10659383315164886No Hit
CTGGGG50640.10642570407727718No Hit
GTGGGA50180.10545896189963998No Hit
GTCGGG50070.10522778442237891No Hit
TCGGGG50020.1051227037508966No Hit
GAAGGG49950.10497559081082138No Hit
CGGGTG49920.10491254240793199No Hit
AGGTGG49910.10489152627363553No Hit
GGGAAG49700.10445018745340985No Hit
CGGGGA49540.10411392930466648No Hit
GGAGGT49450.10392478409599834No Hit
GCAGGG49420.10386173569310897No Hit
GCCGGG49190.10337836460429035No Hit
GCGGGT48990.10295804191836114No Hit
GGTGGA48940.10285296124687884No Hit
GGGGAT48590.10211739654650272No Hit
GGCTGG48340.10159199318909119No Hit
GTGGAG48340.10159199318909119No Hit
TGGGAG48020.10091947689160445No Hit
GGGAGT48010.10089846075730799No Hit
CGGGGT47950.10077236395152923No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)