FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9807549
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG306940.3129630043143297No Hit
GGGGGT205740.20977718286189548No Hit
GTGGGG198950.20285394444626276No Hit
GGTGGG194250.19806171756062602No Hit
TGGGGG194230.19804132510579353No Hit
GGGTGG192730.19651189099335625No Hit
GGGGTG192370.1961448268063713No Hit
AGGGGG148070.1509755393523907No Hit
GGGTTG145690.14854883722732357No Hit
GGGGTT141910.14469466326398167No Hit
GGTGGT139510.14224756868408203No Hit
GGGTGT139370.14210482150025455No Hit
GGGAGG136140.13881144004480628No Hit
GTGGTG135290.13794476071442519No Hit
GAGGGG133380.13599728127792174No Hit
GGGGAG132250.13484510757988566No Hit
GGTTGG129290.13182702426467613No Hit
CGGGGG129260.13179643558242737No Hit
GGAGGG128820.13134780157611245No Hit
GGGGGC128750.1312764279841987No Hit
TTGGGG128360.130878775114965No Hit
GGTGTG128000.13051171092798006No Hit
GGGGGA127220.1297164051895127No Hit
TGGTGG126630.12911482777195402No Hit
GTGTGG125950.12842148430764913No Hit
GTGGGT124230.1266677331920544No Hit
GGGCGG123800.12622929541315572No Hit
TGGGGT123580.12600497840999825No Hit
GTTGGG122640.12504653303287092No Hit
GCGGGG122330.12473044998296721No Hit
TGTGGG119590.12193668367091513No Hit
TGGGTG118960.12129432134369147No Hit
GGCGGG116320.11860251730580189No Hit
GGGGCG115280.11754210965451205No Hit
GGGGTA109700.11185261475624542No Hit
GGTTTG108360.11048632028246813No Hit
GGTGTT106730.10882433521361963No Hit
AGGTGG106500.10858982198304593No Hit
TGTGGT101970.10397093096348538No Hit
GTGGTT100310.10227835721238812No Hit
TGAGGG99510.10146265901908826No Hit
TGGTGT98620.10055519477904214No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)