FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22683506
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1132620.4993143476145178No Hit
GGTGGG644730.2842285491493246No Hit
GGGGGT639180.2817818374284822No Hit
GGGTGG638590.28152173654284307No Hit
TGGGGG637350.28097508383404224No Hit
GGGGTG637000.28082078669849364No Hit
GTGGGG590220.2601978724100234No Hit
CGGGGG466340.2055855034049851No Hit
AGGGGG452310.19940039251427885No Hit
GGGGGC431650.19029245302732303No Hit
GGGGTT429100.18916828818261164No Hit
GGCGGG422230.1861396558362715No Hit
GGTTGG418010.18427927323051385No Hit
GAGGGG404030.17811620478774315No Hit
GGGGAG403410.1778428784333427No Hit
GGGTTG399430.17608829957767552No Hit
TGGTGG397180.17509638942057723No Hit
GGGGCG394600.17395899910710452No Hit
GCGGGG389230.17159164019882991No Hit
TGTGGG386140.17022941691641494No Hit
TTGGGG383830.16921105582179402No Hit
GGGCGG383120.1688980530611097No Hit
GGGTGT381560.16821032868552155No Hit
GGTGGT380570.1677738882163983No Hit
GTGTGG377090.16623973384008628No Hit
GGAGGG376740.16608543670453765No Hit
GGTGTG373820.16479815774510342No Hit
GTTGGG369950.16309207227489436No Hit
GTGGGT355870.15688491893625262No Hit
TGGGGT355000.15650138034217462No Hit
GGGAGG350160.1543676713820165No Hit
TGGGTG346620.15280706606818187No Hit
GTGGTG342680.1510701211708631No Hit
GGGGGA338370.14917006215882148No Hit
AGGGGT306200.1349879511571095No Hit
TCGGGG296290.1306191379762899No Hit
GGGGAT292380.12889541854773243No Hit
GGGGCT289770.12774480276549843No Hit
CGGGGT289380.1275728716716014No Hit
CGGTGG289170.1274802933902722No Hit
GGGTAG280980.12386974041843443No Hit
AGTGGG279480.12320846698036891No Hit
AGGGTG271990.11990650827962837No Hit
GGGTCG271720.1197874790607766No Hit
AGGTGG270650.11931577067495651No Hit
GGGGTA270410.11920996692486602No Hit
TGTGGT267470.1179138709862576No Hit
TGCGGG266450.11746420504837303No Hit
GGTGCG263740.11626950437026798No Hit
TAGGGG259350.11433417744152953No Hit
CTGGGG259280.11430331801441981No Hit
GTCGGG259180.11425923311854878No Hit
GTTGGT257530.11353183233667669No Hit
TTGGGT255690.11272067025264966No Hit
GTGGGC254300.11210789020004226No Hit
TGTTGG253250.1116449987933964No Hit
CGTGGG251160.11072362446969176No Hit
GGGGTC249130.10982870108350974No Hit
ATGGGG249070.10980225014598714No Hit
TGGGCG248730.10965236150002561No Hit
GTTTGG248590.10959064264580616No Hit
TGGGGC247630.10916742764544422No Hit
GGTGTT245930.10841798441563663No Hit
GGCTGG244250.10767735816500325No Hit
GTGGTT243780.10747015915440938No Hit
GTAGGG242650.10697199983106667No Hit
GGTCGG242460.10688823852891172No Hit
GGGTGC241720.10656201029946605No Hit
TGGGTT241220.10634158582011087No Hit
GGGTTT241020.1062534160283688No Hit
GGCGTG240830.10616965472621384No Hit
GCGGGT240210.10589632837181343No Hit
TTGGTG238350.10507634930861218No Hit
GGTAGG238150.1049881795168701No Hit
TTTGGG238130.10497936253769591No Hit
GTGTTG237830.10484710785008278No Hit
GGCGGT237570.1047324871208181No Hit
TGGTTG235920.10400508633894602No Hit
GGGCTG235320.10374057696371981No Hit
GCGGTG235280.1037229430053714No Hit
GGAGTG234810.10351574399477753No Hit
GTGTGT234690.10346284211973228No Hit
CGGGTG233280.1028412450879507No Hit
GCGTGG232830.10264286305653103No Hit
TGAGGG232140.1023386772750209No Hit
TGGCGG231790.10218438013947226No Hit
GTGGCG231310.1019727726392913No Hit
GGTTTG229590.1012145124303095No Hit
GGATGG229430.10114397659691583No Hit
GCTGGG227340.10022260227321121No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)