FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483927

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483927
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12745859
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG406860.3192095566097193No Hit
GGGGTG277810.21796098638781425No Hit
GGGTGG276200.2166978310367312No Hit
GTGGGG265520.20831863901836664No Hit
GGGGGT260030.2040113577280276No Hit
TGGGGG257170.20176749170063785No Hit
GGTGGG251430.1972640682750374No Hit
CGGGGG207170.1625390646483693No Hit
GTGGTG197690.15510135487925922No Hit
AGGGGG191760.15044886343086017No Hit
GGGTTG189300.14851882481988857No Hit
GGGGAG187440.14705952733354416No Hit
GGGGTT185660.14566299533048344No Hit
GGGGGA185590.14560807553261024No Hit
GGGTGT180990.14199906024380154No Hit
TGGGGT179720.1410026581966739No Hit
GGTGGT178810.14028870082432263No Hit
GGAGGG176020.13809975459480606No Hit
GTTGGG175590.13776239012215655No Hit
TGTGGG173390.13603633933185671No Hit
GTGGGT173060.13577743171331175No Hit
TTGGGG172450.13529884490327407No Hit
GAGGGG172300.13518115962211727No Hit
GGGGCG172200.13510270276801273No Hit
TGGTGG170110.1334629545172279No Hit
GGGAGG170030.1334001890339443No Hit
GGTGTG169220.13276468851569753No Hit
GCGGGG166930.13096802655670364No Hit
GGTTGG164000.1286692407314407No Hit
GTGTGG163450.12823772803386574No Hit
GGCGGG162290.12732762852625312No Hit
TGGGTG158760.12455810157636295No Hit
GGGGGC158460.12432273101404935No Hit
GGGCGG154670.12134921624348739No Hit
AGGGGT142910.11212269020079385No Hit
GGGTTT142480.11178532572814434No Hit
GGGTAG138170.10840383531623879No Hit
ATGGGG134610.10561077131011727No Hit
CGGGGT132780.10417501088000425No Hit
TAGGGG130830.10264510222496577No Hit
GGTGTT130470.10236265755018943No Hit
TTGGTG128920.1011465763115691No Hit
AGGTGG128290.10065229813071054No Hit
TGGTGT127840.10029924228724012No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)