FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8468236
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG177010.20902818485455532No Hit
GCAATT149670.17674283050212583No Hit
GGTGGG120740.1425798714159596No Hit
GCGGGG116790.13791538166862616No Hit
GGGGTT116720.1378327198250025No Hit
GTGGGG113420.1339358043398885No Hit
GGGGTG112510.13286120037278132No Hit
GGGTGG107960.1274881805372453No Hit
TGGGGG106860.12618920870887396No Hit
GGGCGG102270.12076895353412447No Hit
GGGGGC100580.11877326045235395No Hit
AGGGGG100280.11841899540825267No Hit
GGGGGT99150.11708459707547121No Hit
GGGGCG93890.11087314996889554No Hit
TGTGGG93780.1107432527860584No Hit
GGAGGG92880.10968045765375456No Hit
GAGGGG92200.10887745688712502No Hit
GGCGGG88580.10460265868830296No Hit
CGGGGG85320.10075297854240245No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)