FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7120123
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG206370.2898404985419494No Hit
GGGGTG150950.2120047645244331No Hit
TGGGGG150900.21193454101846276No Hit
GGGGGT130860.18378895982555357No Hit
GTGGGG127720.17937892365061672No Hit
GGGTGG125800.17668234102135597No Hit
TGGTGG112320.15775008381175437No Hit
GGGGCG111440.15651415010667652No Hit
AGGGGG109670.15402823799532678No Hit
TGTGGG106330.14933730779650856No Hit
CGGGGG104440.14668285927083No Hit
GGTGGG103480.14533456795619962No Hit
GGGGGA102680.14421099186067432No Hit
GGGCGG101310.1422868677970872No Hit
GAGGGG101260.14221664429111688No Hit
GGTGTG100510.1411632917015619No Hit
GGGGTT98770.13871951369379434No Hit
GTTGGG98540.1383964855663308No Hit
GGGGGC98000.13763807170185122No Hit
GGTTGT96740.13586843935139886No Hit
GGGTTG93740.1316550289931789No Hit
GGGAGG91740.12884608875436562No Hit
GGTGGT90580.12721690341585393No Hit
TTGGGG88670.12453436548778724No Hit
GGGTTT88060.12367763871494918No Hit
GGGGAG87440.12280686724091704No Hit
GTGGTG87440.12280686724091704No Hit
GAGGGT87240.12252597321703572No Hit
GGGGCT82520.11589687425343634No Hit
GGAGGG81960.11511037098656864No Hit
GTGGGT80790.11346714094686286No Hit
TGGTGT79920.11224525194297907No Hit
TGTGGT79570.11175368740118675No Hit
GCGGGG79430.11155706158446982No Hit
GGGGTA78930.1108548265247665No Hit
TGGGTG78820.11070033481163177No Hit
CGGTGG78440.11016663616625723No Hit
GGGTGT78130.10973125042924119No Hit
TGGGGT78130.10973125042924119No Hit
GGTTGG76930.10804588628595321No Hit
GGCGGG74970.10529312485191619No Hit
GTGTGG74700.10491391791967639No Hit
AGTGGG74180.10418359345758493No Hit
GGGCGT73330.10298979385608928No Hit
TGTTGG72730.10214711178444529No Hit
AGGTGG72540.10188026246175803No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)