FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7797365
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG395560.5072995813329246No Hit
GGGGGT182730.23434839846537903No Hit
TGGGGG180860.23195015239122446No Hit
GCCGTC180590.23160388156768347No Hit
GTGGGG179220.22984687775934565No Hit
GGTGGG177870.22811552364164048No Hit
CGGGGG171890.22044626614247248No Hit
GCGGGG171520.21997174686576812No Hit
GGGGTG171200.21956135181564543No Hit
GGGTGG168890.21659881254757216No Hit
GGGGGA162530.2084422109263835No Hit
GAGGGG159860.20501797722692217No Hit
AGGGGG155630.1995930676581127No Hit
GGCGGG153000.19622013333991675No Hit
GGGAGG151750.19461702767537495No Hit
GGGGCG151630.19446312953157893No Hit
GGGGGC149840.19216748221995508No Hit
GGGCGG143300.18378003338307236No Hit
GGGGAG138800.17800885299072186No Hit
GGAGGG133670.17142970734344232No Hit
TGGTGG95420.12237467400846311No Hit
GGGTTG93550.11997642793430859No Hit
GGTGGT93150.1194634341216552No Hit
GGGTGT92670.11884784154647114No Hit
GCAATT92140.11816812474470541No Hit
GTGGGT90050.11548773207359153No Hit
CAGGGG88190.11310231084475332No Hit
GTTGGG87800.11260214187741628No Hit
GGTTGG87100.11170440270527288No Hit
GGGGTT86730.11122988342856849No Hit
GTGTGG86380.11078101384249679No Hit
GGGTGA85880.11013977157668008No Hit
GGTGTG85820.11006282250478207No Hit
GTGGTG85410.10953700384681235No Hit
GGGGTA84580.1084725416855566No Hit
GGTAGG84040.10778000003847453No Hit
TTGGGG83750.10740807952430084No Hit
TGTGGG83650.10727983107113748No Hit
AGGGTG83600.10721570684455582No Hit
AGGTGG83080.10654881488810643No Hit
TGGGTG82990.10643339128025942No Hit
CGTGGG81950.10509960736736065No Hit
GGCGTG81800.10490723468761563No Hit
GAGGGT81650.10471486200787061No Hit
CGGTGG81470.1044840147921766No Hit
AGGGGT80690.1034836768575025No Hit
GGGTCG80290.10297068304484913No Hit
GTCGGG80050.1026628867572571No Hit
AGTGGG79260.10164972397726668No Hit
TAGGGG78790.10104695624739897No Hit
CCGGGG78660.1008802332582866No Hit
GGGCTG78070.10012356738462289No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)