FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11719963
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG892990.7619392655079201No Hit
GGGGGT426760.36413084239259114No Hit
TGGGGG375040.3200010102420972No Hit
GGGTGG347640.2966220968445037No Hit
GGGGTG343470.293064065133994No Hit
AGGGGG332040.2833114746181366No Hit
CGGGGG329490.2811356998311343No Hit
GGGGGA327500.279437742252258No Hit
GGTGGG311010.2653677319629763No Hit
GTGGGG307730.2625690883153812No Hit
GCGGGG294150.25098202101832573No Hit
GGGGCG290270.2476714303620242No Hit
GGGGAG289160.2467243283959173No Hit
GGGCGG288920.24651954959243472No Hit
GGCGGG286270.24425845030398133No Hit
GGAGGG274410.23413896443188428No Hit
GGGGGC270870.23111847708051636No Hit
GAGGGG267310.22808092482885822No Hit
GGGAGG239960.20474467368199029No Hit
GGGGTT209150.17845619478491528No Hit
TTGGGG204960.1748810981741154No Hit
TGGGGT191720.16358413418199358No Hit
GGGTGT186490.15912166275610257No Hit
TGGTGG185930.15864384554797656No Hit
TGGGTG181830.15514554098848263No Hit
GTGGGT181310.15470185358093708No Hit
GGTTGG180340.15387420591686168No Hit
AGGGGT176700.1507683940640427No Hit
GTGGTG176100.15025644705533625No Hit
GGGTTG174750.1491045662857468No Hit
GTGTGG168210.14352434389084676No Hit
GGGGTA167740.14312331873402673No Hit
GTTGGG166630.14217621676791983No Hit
CGGGGT163820.13977859827714473No Hit
TAGGGG163780.13974446847656433No Hit
GAGGGT163550.13954822212322684No Hit
GGTGGT162530.13867791220842593No Hit
CGGTGG161520.13781613474377008No Hit
TGTGGG160250.1367325135753415No Hit
GGGTAG160190.13668131887447085No Hit
GGCGGT158590.13531612685125372No Hit
AGGTGG157880.1347103228909511No Hit
GGGGTC151910.12961645015432216No Hit
GGGGAT149670.12770518132181816No Hit
GATGGG149540.12759425946993178No Hit
TGAGGG148970.12710790981166067No Hit
ATGGGG147700.12602428864323206No Hit
TGGGAG145340.12401063040898679No Hit
GGTCGG144630.1234048264486842No Hit
GCGTGG143410.12236386753098111No Hit
TCGGGG142540.12162154436835679No Hit
GCAATT141780.12097307815732866No Hit
GGTGTG141400.1206488450518146No Hit
GTAGGG141330.12058911790079883No Hit
GGGCGT140980.12029048214572008No Hit
GAGGTG137490.11731265704507769No Hit
CTGGGG136940.11684337228709682No Hit
AAGGGG136330.11632289282824528No Hit
GGGGCT135970.11601572462302141No Hit
GTGGAG134720.11494916835488303No Hit
GGGGCA134320.11460787034907875No Hit
TGGGCG133460.11387407963659954No Hit
AGTGGG132880.11337919752818333No Hit
GGGTCG132620.11315735382441054No Hit
GGAGGT131850.11250035516323728No Hit
GTGAGG131820.11247475781280197No Hit
GGTAGG131820.11247475781280197No Hit
AGGGTG131640.11232117371019004No Hit
GGGCCG130850.11164711014872658No Hit
GTGGCG130830.11163004524843635No Hit
TGGCGG130550.11139113664437336No Hit
GGGAGT130490.11133994194350272No Hit
GGAGTG130350.11122048764147122No Hit
TGGGGA129230.11026485322521923No Hit
GGCGTG129210.110247788324929No Hit
GGTGGC129120.11017099627362306No Hit
GGGTGA128630.10975290621651279No Hit
TGGAGG128510.10965051681477152No Hit
CCGGGG128140.10933481615940255No Hit
GGGACG127820.10906177775475913No Hit
GAGTGG127770.10901911550403359No Hit
GGGATG126680.10808907843821691No Hit
GGGGCC125700.10725289832399641No Hit
GGCTGG125440.10703105462022364No Hit
GGCCGG125180.10680921091645085No Hit
AGGAGG124070.10586210895034397No Hit
GTCGGG123840.10566586259700649No Hit
GCCGGG123530.10540135664250816No Hit
GGAAGG122890.10485527983322132No Hit
ACGGGG122790.10476995533177025No Hit
GGGGAA122670.10466756593002896No Hit
GGATGG121580.1037375288642123No Hit
CAGGGG120910.1031658547044901No Hit
GCGGGT120880.10314025735405478No Hit
AGGGGC120140.10250885604331686No Hit
CGGGTG119590.10203957128533597No Hit
TGGTTG119380.10186038983228873No Hit
GGCGAG119030.10156175407720998No Hit
AGAGGG119000.10153615672677464No Hit
GAGAGG118980.10151909182648444No Hit
GCGGTG117950.1006402494615384No Hit
GCGAGG117500.10025628920500858No Hit
GGCAGG117240.10003444550123579No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)