FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15768484
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1186100.7521965967051747No Hit
TGGGGG574750.36449287071604347No Hit
GGGGGT519860.32968292957014766No Hit
GGGGTG502970.3189716906203539No Hit
GGGTGG496770.31503979710414776No Hit
AGGGGG479970.3043856340279763No Hit
GTGGGG470660.2984814519899313No Hit
GGTGGG446190.28296315612838874No Hit
CGGGGG431150.273425143469721No Hit
GGGCGG420120.26643017806911556No Hit
GGCGGG419040.2657452675856474No Hit
GCGGGG417950.2650540153384434No Hit
GGGGGC411980.2612679823881611No Hit
GAGGGG409300.25956838970696233No Hit
GGAGGG406410.2577356199873114No Hit
GGGAGG404160.25630872314675274No Hit
GGGGGA401190.2544252193172153No Hit
GGGGAG393960.24984012413622006No Hit
GGGGCG385700.24460182729043578No Hit
GGGGTT275370.17463314799317425No Hit
TGGGGT274690.17420190805913874No Hit
GGGTGT259020.16426436428511454No Hit
GGGTTG253080.16049735662603964No Hit
GTGGGT245030.15539223681870748No Hit
GTGGTG243900.15467561751656025No Hit
GTGTGG242930.15406046643418608No Hit
TTGGGG238190.15105447042340914No Hit
TGGTGG233380.14800408206648147No Hit
GGTGGT230910.14643766642373485No Hit
GTTGGG230530.1461966794017738No Hit
AGGGGT228290.14477612432495096No Hit
TGGGTG226060.1433619110118639No Hit
TGTGGG222810.14130083779772362No Hit
GGGGTA221540.14049543380327492No Hit
TAGGGG220170.1396266121714681No Hit
GGTGTG216180.1370962484408774No Hit
AGGTGG215820.136867944946388No Hit
GGGGAT212940.1350415169904729No Hit
ATGGGG211050.13384292364440362No Hit
AGGGTG210610.1335638860400277No Hit
CGGGGT209000.13254286207856125No Hit
GCGGGT206400.13089400350724903No Hit
GGTTGG202940.12869975325465657No Hit
TGGAGG201490.1277801975129632No Hit
TCGGGG200670.12726017288662628No Hit
GGGTAG200040.12686064177126982No Hit
GTAGGG198700.12601084543067045No Hit
GGCGGT197520.1252625173098441No Hit
GAGGGT195640.12407026572751065No Hit
TGGCGG193480.12270044476057432No Hit
GTCGGG192020.12177454725514514No Hit
GTGAGG191670.12155258552439156No Hit
GGGGCT191120.12120378851892166No Hit
GGGAGT190710.1209437762057532No Hit
TGCGGG189930.12044911863435953No Hit
TGGGGC186850.11849585540372809No Hit
TGAGGG185350.11754459084335564No Hit
GTGGAG185340.11753824907961984No Hit
GGGATG185290.11750654026094075No Hit
CTGGGG185070.11736702145875277No Hit
TGGGGA184870.11724018618403648No Hit
GCGTGG184730.11715140149173503No Hit
GGGTCG184690.11712603443679177No Hit
GGGCGT184620.11708164209064105No Hit
AAGGGG181760.11526789766219758No Hit
CGGTGG181540.11512837886000962No Hit
ACGGGG181480.11509032827759472No Hit
AGTGGG180210.11428492428314604No Hit
GGGGTC178910.11346049499748993No Hit
GGGCTG178780.11337805206892433No Hit
GAGTGG178370.11311803975575585No Hit
GGCTGG178300.11307364740960513No Hit
GGTAGG178210.11301657153598278No Hit
CAGGGG177960.11285802744258738No Hit
CGGGTG177820.11276924275028595No Hit
GATGGG176630.11201457286572379No Hit
GGCGTG176370.11184968700859259No Hit
GGAGGT173600.11009301845377145No Hit
GTGCGG172580.10944615855271819No Hit
GGGTGA172330.10928761445932278No Hit
TGGGAG171980.1090656527285692No Hit
GGGAAG171660.10886271628902308No Hit
AGGGAG171110.1085139192835532No Hit
TGGGCG170900.10838074224510105No Hit
GGGGAC170860.10835537519015778No Hit
GGTGGA170310.1080065781846879No Hit
GGTCGG168880.10709970597046616No Hit
GAGGTG168850.1070806806792587No Hit
GTGGGA168370.10677627601993953No Hit
GGGGAA167650.10631966903096074No Hit
GGATGG167160.10600892260790573No Hit
GGCAGG166690.10571085971232237No Hit
GCAGGG166300.10546353092662554No Hit
GGCCGG164790.10450592460251727No Hit
GGTGGC164770.10449324107504564No Hit
GGGTGC163510.10369417884433278No Hit
AGGAGG162830.10326293891029727No Hit
GGAAGG162780.1032312300916182No Hit
AGGGGA161890.10266681311913053No Hit
CCGGGG161740.10257168666309328No Hit
GCTGGG161010.1021087379103787No Hit
GTGGCG160370.10170286503128646No Hit
AGGGGC160240.10162042210272085No Hit
AGGCGG159900.1014048021357031No Hit
GCCGGG158720.10065647401487678No Hit
CGTGGG157940.10016181644348308No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)