FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6844108
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG165590.2419453345856027No Hit
GGGGGT131140.19161006810529582No Hit
GTGGGG123540.1805056261531817No Hit
GGTGGG118310.17286401675718735No Hit
GGGTGG118000.17241107241440376No Hit
GGGGTG114440.16720951802630818No Hit
TGGGGG107880.15762463128869386No Hit
GGGGTT97370.14226835695754655No Hit
GTTGGG97300.14216607920272445No Hit
GTGGGT96320.140734190635215No Hit
GGTTGG92840.13564952510977327No Hit
TTGGGG90990.13294647016090338No Hit
GGTGGT90280.1319090815048506No Hit
GGGTGT90220.13182141485786023No Hit
GTGTGG87240.12746730472400494No Hit
GGGTTG86500.12638608274445698No Hit
CGGGGG86270.12605002726432724No Hit
GTGGTG86270.12605002726432724No Hit
AGGGGG82390.1203809174256163No Hit
GGGTTT82230.12014713970030864No Hit
TGGGGT82130.12000102862199134No Hit
GGTGTG80460.1175609736140926No Hit
TGGGTG78620.11487252977305444No Hit
GGGGGA78080.11408352995014107No Hit
TGTGGG78070.11406891884230931No Hit
GAGGGG77660.11346986342120843No Hit
GGAGGG77480.11320686348023731No Hit
GTTGGT77180.11276853024528545No Hit
GTTTGG76110.11120514170729041No Hit
GGGGAG75960.11098597508981448No Hit
TGGTGG74910.10945180876748292No Hit
GCGGGG74200.10841442011143014No Hit
GTGGTT73510.10740625367104085No Hit
GGGAGG72880.1064857538776419No Hit
TGGGTT72830.10641269833848327No Hit
TTTGGG72470.10588669845654101No Hit
GGGGGC71430.10436714324204119No Hit
GTTGTG70800.10344664344864225No Hit
GTGTTG69040.10087508847025793No Hit
GGCGGG68830.1005682552057916No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)