FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13015300
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG372720.28637065607400525No Hit
GTGGGG281520.21629927854140896No Hit
TGGGGG272370.20926909099290833No Hit
GGGTGG259880.19967269290757803No Hit
AGGGGG238770.18345332032300446No Hit
CGGGGG230960.1774526902952679No Hit
GGTGGG200850.15431837913839866No Hit
GGGGGT192550.14794126912172598No Hit
GGGGTG188650.14494479574039784No Hit
GCGGGG179550.13795302451729888No Hit
GGGGGC177640.13648552088695612No Hit
GAGGGG174000.13368881239771654No Hit
GGGGAG172420.1324748565150246No Hit
TGTGGG170570.13105345247516387No Hit
GCAATT168220.12924788518128666No Hit
GGGCGG166850.12819527786528162No Hit
GTGGTG163540.12565211712369287No Hit
GGCGGG163350.12550613508716663No Hit
GGGGGA162870.12513733836331087No Hit
GTTGGG158260.12159535316127942No Hit
TGGCGG157970.12137253847394988No Hit
TTGGGG156450.12020468218173995No Hit
TGGTGG152720.1173388243067774No Hit
GTGTGG151830.11665501371462816No Hit
TGGGGT149620.11495701213187555No Hit
TGGGTG148420.11403502032223613No Hit
GGGAGG146770.11276728158398193No Hit
AGGTGG143700.11040851920432107No Hit
GGAGGG142150.10921761311687014No Hit
GGGGCG140610.10803439029449956No Hit
TAGGGG139440.1071354482801011No Hit
AGTGGG136940.10521463201001897No Hit
GAGTGG136860.10515316588937634No Hit
ATGGGG136830.10513011609413538No Hit
AGGGTG136510.10488425161156484No Hit
GCTGGG136190.10463838712899433No Hit
ATCTCG131610.10111945172220387No Hit
CGGTGG131210.10081212111899072No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)