FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3662120
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG128290.35031621028256854No Hit
GGGTGG89410.24414819831136061No Hit
GTGGGG80380.21949034985199828No Hit
GGGGGT77310.21110722750756392No Hit
CGGGGG74390.20313370397474687No Hit
TGGGGG70460.19240221511037323No Hit
GAGGGG65460.17874892138979606No Hit
GGGGTG63030.17211342064159557No Hit
GGTGGG62960.1719222745295075No Hit
GGGGTT62920.17181304817974288No Hit
GGGCGG59030.16119078566513384No Hit
GGGAGG58400.15947047065634112No Hit
GGCGGG57820.1578866885847542No Hit
GCGGGG56660.15471912444158029No Hit
GGGTTG56590.15452797832949222No Hit
AGGGGG56290.15370878070625757No Hit
TGGGTG55440.15138772077375945No Hit
GGGGGA54910.1499404716393783No Hit
GGGGCG54670.14928511354079058No Hit
GGGGGC54090.1477013314692036No Hit
GGGTGT53580.14630869550970477No Hit
GTGTGG52130.14234924033073737No Hit
GGGGAG47850.13066202090592335No Hit
GGTGGT47380.12937861129618908No Hit
TGGTGG47290.1291328520092187No Hit
GGAGGG46840.12790405557436677No Hit
GGTTGG46320.12648411302742674No Hit
TGGGGT45800.1250641704804867No Hit
GGGAGT45030.12296156324751782No Hit
TTGGGG44860.1224973512610182No Hit
GGGGCT44000.12014898474107893No Hit
TGTGGG41910.11444190796587768No Hit
CTGGGG41760.11403230915426038No Hit
CGGGGT41350.11291273906917304No Hit
GCGTGG41200.11250314025755574No Hit
GTGGTG40870.11160202287199765No Hit
GGGTTT40770.11132895699758609No Hit
TAGGGG40740.11124703723526264No Hit
AGGTGG40610.11089205159852762No Hit
GGCGGC40410.11034591984970454No Hit
TGGCGG40100.10949941563902876No Hit
GGGCGT39220.10709643594420717No Hit
ACGGGG39130.1068506766572368No Hit
GGTGTG39110.10679606348235449No Hit
GTTGGG38790.10592225268423754No Hit
GGAGTG38680.10562188022238483No Hit
GTTGGT38300.10458422989962099No Hit
GTGGGT38230.1043930837875329No Hit
GGCTGG37340.10196279750527017No Hit
GCCGGG37130.10138935916900592No Hit
AGGGGT37100.10130743940668246No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)