FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3881102
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG99020.25513372232937964No Hit
GGGTGG75480.1944808459040757No Hit
GTGGGG72510.18682838018686446No Hit
GGGGGT65170.16791622585544003No Hit
GGGGTG60410.15565166800563346No Hit
GGTGGG59600.15356463190093947No Hit
TGGGGG57370.1478188411435721No Hit
GGGTGT56050.144417745269256No Hit
AGGGGG52230.13457517993600787No Hit
GTTGGG51220.13197282627459933No Hit
GTGTGG50560.13027227833744126No Hit
GTGGGT49700.12805641284356867No Hit
TGGTGG48570.1251448686481314No Hit
GGGTTG47440.12223332445269411No Hit
TGTGGG47020.12115115758359353No Hit
CGGGGG46840.12068737178255041No Hit
TTGGGG46700.12032664949285021No Hit
GGGGCG46340.11939907789076402No Hit
GGTGTG45660.11764699819793452No Hit
GGTGGT45440.11708014888554849No Hit
GTGGTG44890.11566302560458344No Hit
GGCGGG44470.11458085873548285No Hit
TGGGGT44160.11378211652257528No Hit
TGTTGG43940.11321526721018928No Hit
GGGGTT43560.1122361638524316No Hit
GGGCGG43310.11159201690653839No Hit
GGTTGG43310.11159201690653839No Hit
GTGTGT42870.11045831828176637No Hit
GAGGGG42030.1082939845435652No Hit
GGGGGA41780.107649837597672No Hit
GTTGGT41680.10739217881931473No Hit
AGGGGT40780.1050732498140992No Hit
GGGGAG40750.10499595218059202No Hit
GTGTTG40490.10432603935686306No Hit
TGTGGT39690.10226476913000482No Hit
TGGGTG39180.1009507093603827No Hit
GCGGGG39030.10056422119284678No Hit
GGAGGG38910.10025503065881805No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)