FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11493812
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG312580.2719550311071732No Hit
GGGGTG210610.18323772826630538No Hit
TGGGGG204060.17753900968625552No Hit
GGGGGT201600.17539872759359557No Hit
GGTGGG200740.1746504988945356No Hit
GTGGGG190640.16586316184743582No Hit
GGGTGG190260.16553254916645582No Hit
AGGGGG165670.14413842857356637No Hit
GCGGGG156730.13636033023682656No Hit
GAGGGG155730.1354902968658266No Hit
GGGGCG153870.13387203479576662No Hit
GGTGGT146870.12778180119876678No Hit
GGGGAG145010.12616353912870681No Hit
TGGGGT144750.12593733045224684No Hit
GGGGGC143140.12453657672493687No Hit
GGGTTG140700.12241369529969691No Hit
GGCGGG137800.11989059852379699No Hit
CGGGGG137620.11973399251701698No Hit
TGGTGG136040.11835933979083703No Hit
GGGGTT135850.11819403345034703No Hit
TGGGTG135790.11814183144808701No Hit
GTTGGG135430.11782861943452703No Hit
TGTGGG134950.11741100341644704No Hit
GGGAGG134810.11728919874450705No Hit
GGGCGG132740.1154882296665371No Hit
GGTTGG132040.11487920630683711No Hit
GGTGTG129990.11309563789628715No Hit
TTGGGG128690.11196459451398719No Hit
GGAGGG127480.1109118541350772No Hit
GTGGGT127350.11079874979684722No Hit
GGGTGT127090.11057254112038721No Hit
GTGGTG126070.10968510708196724No Hit
GGGGGA116450.10131538605294745No Hit
GTGTGG115520.10050625501791748No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)