FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10547150
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG618800.5866987764467179No Hit
GGGGGT331260.314075366331189No Hit
GTGGGG307870.29189875938049614No Hit
TGGGGG303850.28808730320513126No Hit
GGGGTG284330.26957993391579715No Hit
GGGTGG281450.266849338446879No Hit
GGTGGG278220.2637868997786132No Hit
AGGGGG238380.22601366245857887No Hit
GGGCGG234850.22266678676230073No Hit
GGGGGA232700.22062832139487917No Hit
CGGGGG230010.2180778693770355No Hit
GGAGGG220900.20944046495972846No Hit
GGCGGG217020.2057617460641026No Hit
GGGGGC216090.20487999127726447No Hit
GCGGGG215760.20456711054645094No Hit
GGGAGG215590.20440592956391065No Hit
GAGGGG208850.1980155776679008No Hit
GGGGAG202170.19168211317749345No Hit
GGGGCG194080.18401179465542825No Hit
TTGGGG188470.1786928222315981No Hit
GGGTTG187470.1777446988048904No Hit
GGGTGT185160.17555453368919566No Hit
GGGGTT183340.17382894905258767No Hit
GTGGGT175750.1666326922438763No Hit
TGGGGT170560.1617119316592634No Hit
GTTGGG168190.15946487913796617No Hit
GGTGGT165030.15646880910956987No Hit
GGTTGG164860.15630762812702959No Hit
TGGTGG162060.15365288253224804No Hit
GTGTGG154170.1461721886955244No Hit
TGTGGG151930.14404839221969915No Hit
GTGGTG145220.13768648402649056No Hit
GGGGTA138200.1310306575710026No Hit
GGTGTG137260.13013942154989738No Hit
CGGGGT134050.1270959453501657No Hit
GGGCGT132690.12580649748984324No Hit
GTCGGG130850.12406195038470108No Hit
TGGGTG130220.12346463262587523No Hit
ATGGGG129800.12306642078665801No Hit
CTGGGG127630.12100899295070232No Hit
CGGTGG127250.12064870604855339No Hit
GGTGGA126090.11954888287357247No Hit
GTGAGG125520.11900845252034911No Hit
GCGGGT123920.11749145503761681No Hit
AGGGGT123620.1172070180096045No Hit
GGAGGT122560.11620200717729434No Hit
GGTCGG121550.11524440251631958No Hit
GGGTAG121250.11495996548830728No Hit
TTTGGG120380.11413509810707158No Hit
TGAGGG119870.11365155515945066No Hit
TAGGGG119770.11355674281677988No Hit
GGTAGG119290.1131016435719602No Hit
AGGTGG118570.11241899470473067No Hit
GGGGCT118480.11233366359632696No Hit
GGGGAT118270.11213455767671837No Hit
GAGGGT118200.11206818903684883No Hit
GTAGGG117270.11118643425001065No Hit
GGGTCG116770.11071237253665682No Hit
GGGGTC116330.11029519822890543No Hit
CGTGGG115500.10950825578473805No Hit
GGGATG115290.10930914986512943No Hit
TGGGGA115090.1091195251797879No Hit
GTGGGA114520.10857909482656451No Hit
GCGTGG114490.10855065112376329No Hit
GGATGG113880.10797229583347161No Hit
GTGCGG112850.10699572870396268No Hit
TGGAGG112070.10625619243113069No Hit
GTGGCG111260.10548821245549747No Hit
GGGTTT110680.104938300868007No Hit
AGGGTG110450.10472023247986423No Hit
GGAGTG110230.10451164532598854No Hit
GGCGGT109320.10364885300768453No Hit
GGGTGA109070.10341182215100762No Hit
GATGGG108720.10307997895165992No Hit
GTGGGC108640.10300412907752331No Hit
TGCGGG108380.10275761698657931No Hit
TCGGGG107910.1023119989760267No Hit
GGTTGT107390.1018189747941387No Hit
GTGGAG107190.10162935010879716No Hit
GTGTGT106860.10131646937798364No Hit
TTGGGT106780.10124061950384702No Hit
GGGCTG106570.1010415135842384No Hit
GGTTTG106500.10097514494436885No Hit
AGTGGG106440.10091825753876639No Hit
GGGTGC106100.10059589557368578No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)