FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12802177
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG382030.2984101844553469No Hit
GGGGGT257920.2014657350855249No Hit
GGGTGG255210.19934890761157265No Hit
GTGGGG251960.196810276877128No Hit
TGGGGG228880.1787820930768259No Hit
GGGGTG220940.17258002291329044No Hit
GGTGGG208070.16252704520488978No Hit
GTGTGG200800.1568483235312244No Hit
CGGGGG198340.1549267753445371No Hit
AGGGGG189150.1477483087446768No Hit
GGGGCG181180.1415228050666695No Hit
GGCGGG178530.13945284462166083No Hit
GTGGGT175220.13686734685827262No Hit
GGGTGT174980.13667987874249823No Hit
GCGGGG174190.13606279619474093No Hit
GGGGGC168840.13188381944727057No Hit
TTGGGG168770.13182914124683637No Hit
GGGCGG166120.1297591808018277No Hit
GGGTTG164820.12874372850804985No Hit
GGAGGG163530.1277360873857626No Hit
TGGTGG162440.12688466969328732No Hit
GGGGAG157610.12311187386332809No Hit
GGTTGG157530.12304938449140329No Hit
GTTGGG156870.12253384717302379No Hit
GTGGTG156340.12211985508402204No Hit
GGGGTT155300.12130749324899975No Hit
GTGTGT154200.12044826438503389No Hit
TGGGGT152850.11939375623380305No Hit
GGGAGG149280.11660516801165925No Hit
GGGGGA147100.11490233262670872No Hit
GGTGGT141520.11054369893495458No Hit
GTAGGG140400.1096688477280075No Hit
GAGGGG138390.10809880225839716No Hit
TTGTGG137410.10733330745231846No Hit
GGTGTG136530.10664592436114577No Hit
TGGGTG136300.10646626741686199No Hit
GGGTAG135250.10564609441034911No Hit
GTTTGG134290.10489622194725162No Hit
CGGTGG130290.1017717533510121No Hit
CTGGGG129960.10151398469182235No Hit
TGTGGG128850.10064694465636587No Hit
GGGTCG128780.10059226645593167No Hit
GTCGGG128470.10035012013972311No Hit
AGGTGG128200.10013921850947693No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)