FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9622354
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG581410.6042284455550065No Hit
CGGGGG267450.2779465399007353No Hit
TGGGGG251590.26146408664657317No Hit
GGCGGG250870.2607158289956907No Hit
GCGGGG231490.2405752272261029No Hit
GGGGCG230270.23930734620655195No Hit
AGGGGG228560.23753023428570597No Hit
GGGGGT227970.23691707871067724No Hit
GGGTGG226910.23581547716910023No Hit
GGGGGC226460.2353478161372986No Hit
GGTGGG226390.23527506886568506No Hit
GTGGGG226040.23491133250761717No Hit
GGGCGG218720.22730404639031157No Hit
GGGGTG216350.22484103162282326No Hit
GGGGGA208390.21656862759362208No Hit
GAGGGG207940.21610096656182054No Hit
GGGAGG205670.21374187646806594No Hit
GGAGGG193840.20144758756537123No Hit
GGGGAG192410.19996146473097953No Hit
CCGGGG137140.14252229755837292No Hit
CAGGGG126090.13103862111080095No Hit
CGGCGG122460.12726615545426825No Hit
TAGGGG121900.12668417728135964No Hit
ACGGGG120940.12568650041351628No Hit
CGCGGG120440.12516687704484789No Hit
CGGGGC119480.1241692001770045No Hit
GCCGGG117750.12237130332141179No Hit
TGGTGG117260.12186207242011675No Hit
GGCCGG116650.12122813191034126No Hit
CTGGGG116640.1212177394429679No Hit
CGGGTG116430.12099949762812717No Hit
GGGTGT116160.12071890100904623No Hit
GGCTGG116070.1206253688026859No Hit
CGGGGT114870.11937827271788172No Hit
AGCGGG114830.11933670284838824No Hit
TGCGGG114540.11903532129456057No Hit
TGGGGT112850.11727899430846132No Hit
TTGGGG112620.11703996755887386No Hit
TGGCGG112370.11678015587453963No Hit
GGCAGG111750.11613582289739081No Hit
GGCGCG111240.11560580706134903No Hit
AGGCGG109870.11418203903119757No Hit
GAGCGG109020.11329867930446125No Hit
ATGCCG108860.11313239982648736No Hit
GGGGCA108750.1130180826853803No Hit
CGGGCG108530.11278944840316621No Hit
GTGTGG108240.11248806684933851No Hit
AGGTGG108100.11234257230611137No Hit
CGTGGG107700.11192687361117665No Hit
GTGGGT106760.11094998167808003No Hit
GCTGGG106350.11052389051577191No Hit
ATGGGG105300.10943268144156826No Hit
GGGGTA105280.10941189650682151No Hit
TCGGGG104980.10910012248562047No Hit
AAGGGG104910.10902737521400689No Hit
GTCGGG104500.10860128405169878No Hit
GGGTTG104270.10836225730211133No Hit
GGGCGT103630.10769713939021573No Hit
GGGCCG103340.10739575783638806No Hit
CGGTGG102670.10669946252237239No Hit
AGGGGT102500.10652279057702513No Hit
TGAGGG102320.10633572616430449No Hit
GGCGGT102290.10630454876218438No Hit
GGGATG102250.10626297889269092No Hit
GACGGG102010.10601355967573008No Hit
TGTGGG101990.10599277474098334No Hit
GGTCGG101750.1057433555240225No Hit
GGTGGT101610.10559786098079535No Hit
AGGGGC101500.10548354383968829No Hit
CGGGGA101390.10536922669858123No Hit
GGGGCC101130.10509902254687367No Hit
AGGGCG101090.1050574526773802No Hit
TGGGGC100800.10475607112355251No Hit
GTGGTG100660.10461057658032535No Hit
GTTGGG100640.1045897916455786No Hit
GCGAGG100510.10445468956972483No Hit
CGGAGG100210.10414291554852377No Hit
GCGCGG100160.10409095321165694No Hit
TGGGCG99970.10389349633156293No Hit
GCAGGG99690.10360250724510862No Hit
GCGTGG99660.10357132984298852No Hit
GGGTGA99400.10330112569128096No Hit
GGGGTT99260.10315563114805379No Hit
CGAGGG99130.10302052907220001No Hit
TGGGTG99040.1029269968658397No Hit
AGAGGG98420.10228266388869085No Hit
GGTTGG98280.10213716934546369No Hit
GGCGGC98200.10205402960647675No Hit
CGGGAG97880.10172147065052896No Hit
AGTGGG97450.10127459455347412No Hit
GGGTGC96870.10067183144581877No Hit
GCGGGT96780.10057829923945845No Hit
GTGCGG96400.10018338547927047No Hit
GAGGGC96320.10010024574028352No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)