FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13584898
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG428900.3157182335855595No Hit
GGGTGG280310.20633942190806293No Hit
GGGGGT276500.2035348369932553No Hit
GTGGGG263690.1941052483426817No Hit
GGGGTG227590.1675316222469981No Hit
TGGGGG220510.16231995264152888No Hit
GGTGGG220430.16226106371943316No Hit
CGGGGG208170.15323633640826748No Hit
GCGGGG201560.14837063922011046No Hit
GTGTGG198670.14624327690940336No Hit
GGCGGG198160.1458678600310433No Hit
GGGCGG196110.14435883140234104No Hit
GTGGGT189640.13959618982785146No Hit
GGGGGC187680.13815341123650687No Hit
GGGGAG183250.13489243717545762No Hit
AGGGGG179790.1323454912948187No Hit
GGGGGA178620.13148424080916912No Hit
GGAGGG175470.12916548950165102No Hit
GTGGTG170570.12555854302328953No Hit
GGGTGT170430.12545548740962206No Hit
GAGGGG169770.12496965380233256No Hit
TTGGGG167260.12312201387158005No Hit
GGGAGG166610.12264354137955251No Hit
GGGGTT162420.11955923408479034No Hit
GTTGGG160630.11824159445289908No Hit
GGGTTG159460.11738034396724951No Hit
GTGTGT149180.10981311747795236No Hit
GGTTGG147320.10844395003922738No Hit
GGTGGT145520.10711894929207419No Hit
GGTGTG144470.10634603218956816No Hit
ATGGGG142020.10454255895038742No Hit
TGGGGT141800.10438061441462425No Hit
GTCGGG139830.10293047470801768No Hit
GCGGGT137090.10091352912624002No Hit
TGGGTG136940.1008031123973106No Hit
GGCTGG136450.10044241774947445No Hit
GGGGCG136060.10015533425425792No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)