FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21176898
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG771450.3642884807774963No Hit
TGGGGG450660.21280737150455178No Hit
GGGGGT435100.205459742026429No Hit
GTGGGG433150.2045389272782067No Hit
GGGTGG432420.20419421201348753No Hit
GGGGTG430950.2035000593571353No Hit
GGTGGG425780.20105871974261763No Hit
CGGGGG362950.17138959634220272No Hit
AGGGGG341280.16115674731964993No Hit
GGGGCG340930.1609914728776613No Hit
GGGCGG319690.15096167531240884No Hit
GGAGGG318850.15056501665163613No Hit
GCGGGG318170.15024391202148682No Hit
GAGGGG317400.14988030824911186No Hit
GGCGGG313630.14810006640254866No Hit
GGGGAG311600.14714147463901464No Hit
GGGGGC308130.14550289659987029No Hit
GGGAGG301010.14214074223713027No Hit
GGGGTT285030.13459478342862113No Hit
GGGTTG280290.13235649527140378No Hit
TGTGGG279720.13208733403730802No Hit
GGGTGT277430.13100596697401104No Hit
GGGGGA275930.13029764793691692No Hit
TTGGGG273740.12926350214275953No Hit
GGTGGT266100.12565579718049358No Hit
GTTGGG263180.12427693612161705No Hit
GGTTGG262820.12410693955271447No Hit
TGGTGG258360.12200087094908801No Hit
TGGGTG255560.12067867541317903No Hit
TGGGGT255460.12063145414403942No Hit
GGTGTG253890.11989008021854759No Hit
GTGTGG253730.11981452618792421No Hit
GTGGGT249630.11787845415320035No Hit
GTGGTG248780.11747707336551368No Hit
TAGGGG241520.11404880922597824No Hit
CGGTGG224320.10592675093396588No Hit
GTAGGG217460.10268737187098885No Hit
GGGGCT212360.1002790871448689No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)