FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12078489
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG367510.30426819116199055No Hit
GGTGGG212390.17584153117165566No Hit
GGGTGG202040.1672725785485254No Hit
GAGGGG194120.1607154669760431No Hit
GTGGGG189470.1568656476815933No Hit
GCGGGG184840.15303238674970024No Hit
GGGGTG181850.1505569115474626No Hit
TGGGGG180000.14902526301096106No Hit
GGGGGT177360.14683955915346697No Hit
CGGGGG176830.14640076254571247No Hit
GGGGGC170480.1411434824339369No Hit
GGGCGG158640.13134093180032702No Hit
AGGGGG154900.12824451800221037No Hit
GGCGGG152910.12659696092781142No Hit
GGGGGA148970.12333496350412705No Hit
GGTGGT142110.11765544514715374No Hit
GGGGAG139710.11566844164034094No Hit
GGAGGG138380.11456731053031552No Hit
GGGGCG134960.11173583053310725No Hit
GGTTGG134470.1113301506504663No Hit
GGGTTG126270.10454122200218918No Hit
GGGCCG123480.10223133042551928No Hit
GGGAGG122880.10173457954881608No Hit
GTTGGG122620.10151932083557803No Hit
TCGGGG121510.10060033171367709No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)