FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6591453
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG179690.2726106064929842No Hit
GGGGGT116530.17678954852594717No Hit
TGGGGG106950.16225557551574746No Hit
GGGTGG100340.15222743756194576No Hit
GTGGGG86590.13136709007862152No Hit
GGCGGG85420.1295920641473132No Hit
GGTGGG84600.12834802887921679No Hit
AGGGGG84330.1279384075104533No Hit
GGGCGG84320.12792323634864727No Hit
GGGGTG81880.12422147286797007No Hit
TTTTTT79060.11994320523866285No Hit
GGAGGG77510.11759167515872448No Hit
GCGGGG77330.11731859424621552No Hit
GGGTTG76820.11654486499410677No Hit
GGGGTT76100.11545254134407087No Hit
GGGGCG75750.11492155068085898No Hit
TGTGGG74760.11341960566205964No Hit
GGCCGG73920.1121452280703511No Hit
TGTTTT72320.10971784218138246No Hit
GGGAGG72240.10959647288693404No Hit
CGGGGG70360.10674429446739589No Hit
TTTGGG69490.10542440339026918No Hit
TGTTTG69490.10542440339026918No Hit
GGGGGA69170.10493892621247546No Hit
GTGGGT68480.10389211604785774No Hit
GGTTTT68270.1035735216499306No Hit
GTTGGG67940.10307287331033081No Hit
GCCGGG66630.10108545111373775No Hit
GAGGGG66540.10094891065748327No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)