FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9801625
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG305480.3116626069656817No Hit
GGGGGT180950.18461224541848928No Hit
GGTGGG170070.1735120451965873No Hit
GGGGTG164950.1682884215627511No Hit
GTGGGG161800.16507466874115262No Hit
GGGTGG161560.16482981138331654No Hit
TGGGGG157450.1606366291303738No Hit
GGGGCG152900.15599454172139823No Hit
CGGGGG140930.1437822809993241No Hit
GGGGTT140820.1436700547103159No Hit
GGGTTG137130.13990537283358626No Hit
GGGCGG137050.13982375371430758No Hit
GGGTGT135590.13833420478747147No Hit
GGAGGG128840.1314475915983319No Hit
AGGGGG128610.13121293663040567No Hit
GTGTGG127690.13027431675870074No Hit
GGTGGT126770.12933569688699578No Hit
GGGGGC124780.12730542129493835No Hit
GGGAGG124190.126703480290258No Hit
GGGGCT120850.12329588206037263No Hit
GGCGGG119400.12181653552344636No Hit
GGGGAG119390.12180633313353653No Hit
GGGGGA114950.11727647201356917No Hit
GGTTGG113510.11580732786655275No Hit
TGGGGT110910.11315470648999527No Hit
GGGTTT110730.11297106347161823No Hit
TGGTGG110370.1126037774348641No Hit
GGGTCG109780.11200183643018378No Hit
GCGGGG109620.11183859819162639No Hit
GTGGGT108830.1110326093887493No Hit
TTGGGG108420.11061431140244601No Hit
GAGGGG106520.10867585731957712No Hit
GTGGTG105250.1073801538010279No Hit
CGGTGG103410.105502914057618No Hit
GTTGGG102220.10428882965834746No Hit
TGTGGG99560.10157499394233101No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)