FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17772402
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG902750.5079504728736162No Hit
GGGTGG474320.2668857029004858No Hit
GTGGGG446590.25128285979576653No Hit
CGGGGG433060.24366993274178694No Hit
GGGGGT427930.2407834349009211No Hit
TGGGGG400020.22507931117020646No Hit
AGGGGG395710.22265420284776363No Hit
GGGCGG379680.21363460043273835No Hit
GGGGGC372380.20952710837848482No Hit
GGGGCG365260.20552089695022654No Hit
GGTGGG363240.2043843032585016No Hit
GGAGGG361500.20340525720721375No Hit
GGGAGG339530.1910433941343438No Hit
GAGGGG337300.18978863971229099No Hit
GGGGGA336930.18958045175885624No Hit
GGCGGG329450.18537167907860738No Hit
GGGGTG327680.184375752922987No Hit
GGGGAG323050.18177059015433028No Hit
GTGTGG284390.160017762371119No Hit
GCGGGG278580.1567486488320487No Hit
CTGGGG238700.13430936347264708No Hit
TGGTGG238600.13425309645820524No Hit
GGGTGT231040.12999931016640293No Hit
CCGGGG230800.12986426933174255No Hit
CGGTGG226950.12769798927573212No Hit
GGGTTG223010.12548106890672403No Hit
AGGTGG222250.12505343959696613No Hit
GTCGGG218260.12280838572073713No Hit
GGTTGG217880.12259457106585817No Hit
GTGGGT217430.12234136950086995No Hit
GGGTAG213820.1203101302795199No Hit
GGGTCG213550.12015820934052696No Hit
CAGGGG212380.11949988527155755No Hit
GGCTGG210800.11861086644337664No Hit
GTAGGG210670.11853771932460228No Hit
GTTGGG208190.11714229736644488No Hit
TTGGGG205880.11584252933283863No Hit
GGGGTT202820.11412075869091866No Hit
CGGGGT200890.11303480531219133No Hit
GGTGGT200550.11284349746308912No Hit
ATGGGG199390.1121908000955639No Hit
GTGGCG198000.11140868859482247No Hit
GGGCCG197360.11104857970239475No Hit
GTGCGG196900.11078975143596236No Hit
GGGTGA194170.10925366194170039No Hit
AGGGGT190140.10698610125969465No Hit
GGCCGG190130.10698047455825048No Hit
GTGGTG189280.10650220493549492No Hit
TGGGGT188490.10605769552140447No Hit
GGGGCT187770.10565257301742331No Hit
GGATGG187150.10530371752788395No Hit
GTGGGC186160.10474667408490985No Hit
GGGTGC185130.104167123836159No Hit
CGTGGG183850.10344690605130359No Hit
GGGCGT183260.1031149306660968No Hit
TCGGGG183160.10305866365165497No Hit
CGAGGG181730.1022540453451368No Hit
TGTGGG181070.10188268304982073No Hit
CGGCGG180790.1017251354093836No Hit
GGCGGT179650.10108369144474674No Hit
CGGGGA179360.10092051710286544No Hit
AGGCGG179040.10074046265665158No Hit
TAGGGG178870.1006448087321005No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)