FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12958586
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1408801.0871556510872407No Hit
GTGGGG587750.45356028813637533No Hit
GGGGGT566060.43682235083364807No Hit
GGGGTG561520.43331888216816244No Hit
GGGTGG554420.42783988932125777No Hit
TGGGGG542950.4189886149615398No Hit
GGTGGG526740.40647953410966287No Hit
AGGGGG480790.3710204184314554No Hit
CGGGGG473690.36554142558455066No Hit
GAGGGG470730.36325722574978475No Hit
GGCGGG469200.3620765413757334No Hit
GCGGGG464880.3587428443195885No Hit
GGAGGG459350.35447540341206984No Hit
GGGGAG440580.3399907983787737No Hit
GGGCGG436590.3369117587366399No Hit
GGGGCG432870.33404107516051523No Hit
GGGAGG431770.33319221711381164No Hit
GGGGGA422870.3263241838268466No Hit
GGGGGC399110.3079888500180498No Hit
TTGGGG255830.19742123098924527No Hit
GGGTTG250250.19311520562505816No Hit
GTGTGG245880.18974292411224497No Hit
TGTGGG244390.18859310730352832No Hit
GTGGTG244160.18841561880285396No Hit
GGGTGT244090.18836160056351828No Hit
GTGGGT243260.18772109858282376No Hit
GTTGGG237710.18343822389263767No Hit
TGGTGG236520.1825199138239311No Hit
GGGGTT231380.1785534316784254No Hit
TGGGTG231010.17826790669907966No Hit
GGTGGT225270.17383841107355386No Hit
GGTTGG225150.17374580837754983No Hit
GTAGGG223170.17221786389348345No Hit
ATGGGG222340.17157736191278894No Hit
TAGGGG217540.167873254072628No Hit
AGGGTG217030.1674796926146109No Hit
GGGTAG216050.16672343726391137No Hit
TCGGGG214580.16558905423786208No Hit
GGTGTG212220.16376786788311626No Hit
AGGTGG211790.16343604155576852No Hit
GGGGTA207150.15985540397694625No Hit
AAGGGG202660.156390519768129No Hit
GTCGGG202560.15631335085479234No Hit
AGGGGT198450.1531417085166545No Hit
GGTAGG197370.1523082842526183No Hit
GGGATG196320.1514980106625831No Hit
GGCTGG194370.1499932168525177No Hit
CGGTGG194140.14981572835184334No Hit
CAGGGG193260.14913664191448048No Hit
TGCGGG191080.14745435960374073No Hit
TGAGGG190840.14726915421173267No Hit
GGGCTG190530.14702993058038893No Hit
AGCGGG189920.14655920020903515No Hit
GAGGGT189170.14598043335901No Hit
GTGAGG188850.1457334928363326No Hit
GGATGG188690.1456100225749939No Hit
GAGTGG188080.1451392922036401No Hit
CGGGTG187510.144699429397621No Hit
GGTCGG186990.14429815104827023No Hit
GCTGGG186590.1439894753949235No Hit
GGCCGG185250.1429554119562119No Hit
TGGGCG185120.1428550923688742No Hit
GCGTGG184880.14266988697686614No Hit
AGTGGG184640.1424846815848581No Hit
GGGTGA184440.1423303437581847No Hit
GATGGG184350.1422608917361817No Hit
GAGGTG183710.14176701069082692No Hit
GTGGCG183070.14127312964547212No Hit
GTGCGG182780.14104933979679574No Hit
GTGGGA181270.13988408920541176No Hit
GGAGGT181030.1396988838134037No Hit
GGTGGA180820.13953682909539666No Hit
GCAGGG180240.1390892493980439No Hit
CTGGGG180080.1389657791367052No Hit
GCCGGG179900.13882687509269917No Hit
GCGGGT179570.1385722176786881No Hit
GCGGTG179300.13836386161267905No Hit
CGGGGT178040.1373915333046368No Hit
GGTGAG176890.13650409080126488No Hit
TGGGAG176100.13589445638590508No Hit
CGTGGG175190.13519221927454123No Hit
GGGGCT174660.13478322403385679No Hit
GGAGTG174440.13461345242451606No Hit
GGGGAT174410.13459030175051506No Hit
GTGGGC173750.13408098692249293No Hit
GTGGAG173390.13380317883448087No Hit
GGGAAG173370.13378774505181354No Hit
CGAGGG172540.13314724307111903No Hit
GGGTGC171840.13260706067776223No Hit
GGCGTG171790.13256847622109388No Hit
GAAGGG171720.13251445798175818No Hit
TGGGGA171540.13237555393775216No Hit
GGAAGG170450.13153441278238226No Hit
GGGCGT170200.13134149049904056No Hit
GACGGG170140.13129518915103855No Hit
GGGTCG169670.13093249525835612No Hit
GGTGGC168300.1298752811456435No Hit
CCGGGG167550.12929651429561836No Hit
TGGGGC167330.12912674268627766No Hit
GGCAGG166890.12878719946759623No Hit
TGGGGT165600.12779172048555298No Hit
AGAGGG165380.12762194887621225No Hit
GGGCAG165200.1274830448322062No Hit
GGCGGT164340.12681939217751073No Hit
CGCGGG163470.12614802263148156No Hit
ACGGGG162860.12567729226012778No Hit
GGGGTC162440.12535318282411367No Hit
AGGCGG160700.12401044373205533No Hit
GGCGCG159770.12329277283802414No Hit
TGGCGG159740.12326962216402315No Hit
AGGGCG159460.12305354920668042No Hit
GGGGAA158770.1225210837046573No Hit
AGGGGA155420.11993592510787829No Hit
GGACGG155320.11985875619454159No Hit
GGGGCA155010.11961953256319785No Hit
GGTGCG154380.11913336840917674No Hit
CGGCGG154250.11903304882183904No Hit
GGGCCG153240.11825364279713851No Hit
GAGAGG152920.11800670227446113No Hit
GAGGCG152320.117543688794441No Hit
GCGCGG152070.11735076651109928No Hit
CGGGGC151320.11677199966107414No Hit
AGGGAG151130.11662537872573443No Hit
AGGAGG150370.1160388949843756No Hit
GGCGGC149490.11535980854701278No Hit
GCGGGA148210.1143720464563032No Hit
GGCGGA147780.11404022012895543No Hit
GCGGGC147040.11346917017026395No Hit
GGAGAG146560.11309875938624785No Hit
GAGGAG145860.11255857699289104No Hit
GCGAGG145370.11218044931754127No Hit
GGGAGA145330.1121495817522066No Hit
GGGAGT144680.11164798381551815No Hit
GGCGAG143880.11103063250882467No Hit
GAGGGA143500.11073739063814524No Hit
AGGGGC143140.11045958255013316No Hit
GGGACG142960.11032067850612715No Hit
CGGGGA141930.10952583869875926No Hit
GCGGCG139410.10758118208267475No Hit
GCGGAG138560.10692524631931291No Hit
TGGAGG138110.10657798620929784No Hit
CGGGAG138080.10655483553529684No Hit
CGGGCG137990.10648538351329383No Hit
GGGGAC137920.10643136527395812No Hit
GGAGGA137370.10600693625060637No Hit
GAGGGC136040.10498058970322842No Hit
GGGAGC134820.10403912896052084No Hit
GGGGCC134010.1034140607624937No Hit
GGGCGC133300.1028661614778032No Hit
CGGAGG131630.10157744062508055No Hit
GAGCGG131160.10121474673239811No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)