FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11420926
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG355370.31115690619131936No Hit
TGGGGG207410.18160523936500422No Hit
GGGTGG204590.17913608756417826No Hit
GTGGGG200280.1753623130033414No Hit
GGGGTG195570.17123830414451507No Hit
GGTGGG193510.16943459750986917No Hit
CGGGGG181380.15881374242333765No Hit
GGGGGT178060.1559067977500248No Hit
AGGGGG173060.1515288690251561No Hit
GGGGGC171800.15042563098648917No Hit
GCGGGG169290.1482279107666051No Hit
GGCGGG163370.14304444315636053No Hit
GGGGCG160660.1406716057874817No Hit
GGAGGG155340.13601348962422138No Hit
GAGGGG154270.13507661287709946No Hit
GGGCGG145270.12719634117233575No Hit
GGGGAG137660.12053313365308557No Hit
GGGGGA136280.11932482532502181No Hit
GGGAGG135470.11861560087159308No Hit
GTGTGG134920.11813402871185752No Hit
TGTGGG131160.11484182631075625No Hit
GTTGGG128520.11253027994402556No Hit
GGTTGG126990.11119063375421571No Hit
GGGTTG126270.11056021201783463No Hit
TGGGTG123390.10803852507231025No Hit
TTGGGG120560.10556061741403455No Hit
GTGGGT119810.10490392810530424No Hit
GGGGTT119250.10441360008811894No Hit
TAGGGG119220.10438733251576973No Hit
GTGGTG118980.10417719193697604No Hit
CGTGGG118440.1037043756346902No Hit
GGTGTG116070.10162923741910246No Hit
GCTGGG115390.10103383911252029No Hit
GGTGGT114930.10063106966983236No Hit
TGGTGG114690.10042092909103867No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)