FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15210972
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG541300.3558615452056581No Hit
TGGGGG356440.2343308501258171No Hit
GGGGTG314920.20703476411632343No Hit
GTGGGG302460.19884330863274222No Hit
GGGTGG302410.19881043762357856No Hit
GGGGGT299470.19687762228475605No Hit
GGTGGG290600.1910463052591248No Hit
AGGGGG259730.17075174420148823No Hit
CGGGGG253730.16680722310185042No Hit
GGGGGA231780.15237685007900875No Hit
GAGGGG227130.14931984622678945No Hit
GGAGGG225560.14828769653905088No Hit
GGGGCG224580.1476434247594434No Hit
GGGAGG221010.14529643470515888No Hit
GGGGAG217550.1430217608710344No Hit
GGCGGG216340.1422262824492741No Hit
GCGGGG214190.14081282905523723No Hit
GGGCGG213220.14017513147746244No Hit
GGGGGC212150.13947169188136038No Hit
GGGTTG210300.1382554645423054No Hit
TGGTGG209900.1379924964689962No Hit
TGTGGG207320.13629635239615193No Hit
GGGGTT203810.1339888075528638No Hit
TGGGTG198050.1302020672972115No Hit
TTGGGG197470.1298207635909132No Hit
GTGGGT197400.12977474417808407No Hit
GGGTGT192950.12684922436251939No Hit
GTTGGG190030.12492955742736231No Hit
TGGGGT188650.12402231757444561No Hit
GTGGTG186820.12281923863905607No Hit
GGTGGT182370.11989371882349135No Hit
GTGTGG179020.11769136120952692No Hit
GGTTGG174870.11496306744894409No Hit
GGTGTG166280.10931582807462928No Hit
TAGGGG160210.10532528756216236No Hit
CGGTGG155710.102366896737434No Hit
GGGTAG155280.10208420605862664No Hit
GGGTGA155040.10192642521464111No Hit
TGAGGG154530.1015911409211719No Hit
GGGGTA153500.10091399813240073No Hit
TGGGAG153380.10083510771040799No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)