FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7011885
Sequences flagged as poor quality0
Sequence length6
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG515230.7347952797286321No Hit
CGGGGG247300.35268690230943606No Hit
GGGGGT225650.32181075416952787No Hit
GCGGGG225610.3217537081683456No Hit
AGGGGG216910.3093462029112001No Hit
GGGGGC214610.30606605784321905No Hit
GGGGCG205530.29311661557484187No Hit
GGGCGG204830.292118310554152No Hit
GTGGGG201400.2872266159527716No Hit
GGGGTG199700.2848021609025248No Hit
GGGTGG198970.2837610713809482No Hit
TGGGGG198240.28271998185937164No Hit
GGCGGG197740.2820069068445931No Hit
GAGGGG192710.27483337219592163No Hit
GGGAGG183830.26216915993345585No Hit
GGGGAG171190.2441426235598559No Hit
GGAGGG168450.2402349724788698No Hit
GGTGGG165150.23552867738133185No Hit
GGGGGA162000.23103630478822743No Hit
AAGGGG109230.15577836772850667No Hit
GCGCGG108690.1550082467125459No Hit
GCCGGG108050.15409551069362945No Hit
GGGCCG105480.15043030511766808No Hit
GCAGGG105130.14993115260732312No Hit
GGCCGG104330.14879023258367757No Hit
ACGGGG103930.14821977257185479No Hit
CGGCGG101770.14513928850801175No Hit
CGGGGC99040.14124589892732126No Hit
AGGGGC98940.14110328392436558No Hit
CAGGGG97380.13887848987825668No Hit
CGGGGT97030.13837933736791178No Hit
CGGGCG96870.13815115336318268No Hit
GGGCGC96050.13698171033894596No Hit
CGCGGG94940.13539868380613773No Hit
AGCGGG93370.1331596282597333No Hit
CTGGGG92910.13250359924613708No Hit
GGGGCT92750.13227541524140798No Hit
CCGGGG92590.13204723123667889No Hit
GCGGGC92320.13166217072869849No Hit
GGGCAG92240.13154807872633392No Hit
GGGGCC91030.12982243719057002No Hit
GCGAGG90990.12976539118938774No Hit
CGGTGG90970.1297368681887966No Hit
TCGGGG90720.12938033068140736No Hit
GGGCGA90690.12933754618052065No Hit
AGGGGT88120.12567234060455926No Hit
GGCAGG87770.12517318809421432No Hit
TGGGGT87620.12495926558978078No Hit
GCGGGT87080.12418914457382002No Hit
GGGTAG86920.12396096056909091No Hit
GGGCTG85960.12259185654071622No Hit
ATGGGG85810.12237793403628268No Hit
GGGGCA85670.12217827303214471No Hit
AGGGCG85360.12173616652298205No Hit
GGCGGC85090.12135110601500167No Hit
GGGAGT84950.1211514450108637No Hit
TTGGGG84830.12098030700731686No Hit
AGGTGG84760.12088047650524789No Hit
GAACAC84020.11982512548337572No Hit
GGGTGC83830.11955415697775991No Hit
CGTGGG83670.1193259729730308No Hit
GTCGGG83620.11925466547155295No Hit
GCGGTG83560.11916909646977952No Hit
TGGGGC83460.11902648146682383No Hit
TAGGGG83040.11842749845440992No Hit
GCGGCG83000.11837045245322762No Hit
GAGGCG82940.11828488345145421No Hit
GCTGGG82930.11827062195115864No Hit
GTGCGG82810.1180994839476118No Hit
GCGTGG82690.11792834594406497No Hit
GGGTTG82420.11754328543608458No Hit
AGGAGG82360.11745771643431119No Hit
GTGGGC82200.11722953242958205No Hit
GCGGGA81960.11688725642248839No Hit
GTGTGG81930.11684447192160169No Hit
GTGGCG81830.11670185691864599No Hit
AGAGGG81700.11651645741480357No Hit
GGGGTA81680.11648793441421244No Hit
GGGTCG81620.11640236541243902No Hit
GTGGGT81590.11635958091155232No Hit
AGGGTG81560.11631679641066561No Hit
GAGCGG81450.11615991990741434No Hit
GGGGAA81370.11604582790504979No Hit
GGGTGT81030.11556093689500041No Hit
CGGGTG81020.11554667539470484No Hit
AGGCGG80470.11476229287844851No Hit
GGGCGT80350.11459115487490168No Hit
TGCGGG80230.11442001687135485No Hit
GGGGTC79400.11323631234682258No Hit
GGTAGG79340.11315074334504915No Hit
GTTGGG79270.11305091284298018No Hit
GTGGAG79160.1128940363397289No Hit
GGCGCG78930.11256602183293081No Hit
GGGACG78230.11156771681224092No Hit
GGGGAC78120.11141084030898966No Hit
GAAGGG77850.11102577980100928No Hit
TGGGTG77770.11091168779864473No Hit
GGGAAG77570.11062645779273333No Hit
TGTGGG77450.1104553197891865No Hit
CGGAGG77310.11025565878504853No Hit
GAGGGT76750.10945701476849662No Hit
GGCGGT76740.10944275326820105No Hit
TGGTGG76680.10935718426642764No Hit
TGGCGG76550.10917178476258524No Hit
AGTGGG76320.10884377025578713No Hit
GGGGTT76170.10862984775135359No Hit
CGAGGG75850.10817347974189538No Hit
GGCGTG75760.10804512623923525No Hit
GAGGGC75610.10783120373480169No Hit
GGTTGG75480.10764580423095929No Hit
GGCTGG75380.1075031892280036No Hit
GACGGG75330.10743188172652575No Hit
GAGAGG75050.10703255971824979No Hit
GGACGG75020.10698977521736308No Hit
GGGAGC74740.10659045320908715No Hit
GGTGTG74210.10583459369342195No Hit
AGGGAG73690.10509299567805234No Hit
GAGTGG73510.10483628867273209No Hit
GGTGGC73500.10482202717243651No Hit
GGGTGA73160.10433713616238714No Hit
GGTGCG73140.10430861316179602No Hit
GTGAGG72480.10336735414228841No Hit
GTAGGG72320.1031391701375593No Hit
GGAAGG72180.10293950913342131No Hit
GATGGG71880.10251166412455423No Hit
GTGGGA71630.102155126617165No Hit
GTGGTG71470.10192694261243589No Hit
GGTGGT71420.10185563511095803No Hit
GGTGGA70510.10055783858406121No Hit
GGCGGA70260.10020130107667197No Hit
CGGGGA70220.1001442550754897No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)