FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4339768
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG63010.1451920932178863No Hit
GCAATT61800.14240392573980915No Hit
AGGGGG51840.11945339013514086No Hit
GGTGGG51370.11837038293291255No Hit
GCGGGG48770.11237927926101118No Hit
GGGCGG48620.11203363866455535No Hit
GGGGTG47420.10926851389290856No Hit
GGGGGT45780.10548951003832463No Hit
CGGGGG45640.10516691214829917No Hit
GTGGGG43400.10000534590789184No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)