FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22920241
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG683320.29812950047078474No Hit
GTGGGG416100.18154259372752668No Hit
TGGGGG412580.1800068332614827No Hit
GGTGGG389370.16988041268850532No Hit
GGGGTG389150.1697844276593776No Hit
GGGGGT377410.1646623174686514No Hit
GGGTGG361020.1575114327986342No Hit
AGGGGG359150.15669556005104832No Hit
CGGGGG324450.14155610318408082No Hit
GCGGGG317170.13837987131112625No Hit
GGGGGC305820.13342791639930837No Hit
GAGGGG303470.13240262176998924No Hit
GGGGAG300220.13098466111242024No Hit
GGGGCG291200.12704927491818258No Hit
GGCGGG284810.12426134611760846No Hit
GGGGGA271920.11863749600189633No Hit
TGGTGG269820.11772127526931327No Hit
GGGCGG263510.11496825011569468No Hit
TGGGTG258350.11271696488706205No Hit
GGTGGT255630.11153024089057353No Hit
GGGAGG251130.10956691074932413No Hit
GGGTGT250000.10907389673607709No Hit
GGAGGG247550.10800497254806352No Hit
TTGGGG242720.10589766486312252No Hit
GTGTGG241930.10555299134943652No Hit
TGTGGG239410.10445352647033684No Hit
GGGGTT239020.10428337119142857No Hit
GGGTAG238090.10387761629557035No Hit
GTTGGG234570.1023418558295264No Hit
GGGTTG234390.10226332262387643No Hit
ATGGGG232300.10135146484716283No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)