FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9761902
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG217910.2232249412051053No Hit
GGGGTG168960.17308102457902158No Hit
GTGGGG165590.1696288284803515No Hit
GGGGGT165240.16927029179354597No Hit
GGTGGG147280.1508722378077551No Hit
GGGTGG143220.14671321224081127No Hit
GTGGTG141810.14526882158825197No Hit
GTGTGG130590.1337751597998013No Hit
TGGGGG129490.13264833021269828No Hit
AGGGGG128870.1320132080817857No Hit
GGTTGG127210.1303127197957939No Hit
GGTGGT125690.12875564618452429No Hit
TGGTGG122220.12520101103248119No Hit
GGGTTG116730.11957710700230345No Hit
GTGGGT111670.11439369090162962No Hit
TTGGGG111280.11399417859347491No Hit
GGGCGG110730.11343076379992341No Hit
GGGTGT108390.11103368995099522No Hit
TTTGGG106790.1093946650970272No Hit
GGGGTT106650.10925125042230499No Hit
TGTGGG106450.109046372315559No Hit
GGTTTG104250.10679271314135298No Hit
GTTGGG103330.10585027385032139No Hit
GGTGTG103280.10579905432363489No Hit
GGTTTT101300.10377076106684946No Hit
GGAGGG100170.10261319976373456No Hit
GAGGGG100010.10244929727833776No Hit
TTGGGT99420.10184490686343706No Hit
GCGGGG99200.10161954094601647No Hit
GGGGAG97740.10012393076677065No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)