FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483991

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483991
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4310804
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT132460.30727446666561503No Hit
GGGGGG91130.21139908007879737No Hit
GGGGTG89670.20801224087200437No Hit
TGGGGG80580.18692568718039607No Hit
GGGTGG75110.1742366389193292No Hit
GGTGGG73000.16934196033964893No Hit
GTGTGG71340.16549117055658294No Hit
GTGGGG69990.16235950416674014No Hit
TGTGGG67550.1566993071362094No Hit
TGGTGG67190.15586419609891797No Hit
GGTTGG66920.1552378628209494No Hit
GGGTGT65710.1524309618344977No Hit
GGGGGT64550.14974004849211422No Hit
GGGGTT63980.14841778934973615No Hit
GGGCGG62900.1459124562378619No Hit
GTTGGT62450.14486856744124763No Hit
CGGGGG61700.14312875278022383No Hit
TGGTGT58080.13473124734968234No Hit
GAGGGG57840.13417450665815472No Hit
GTGGGT56480.13101964273949826No Hit
GGTGGT55500.1287462849157605No Hit
GTTGGG54860.12726164307168686No Hit
GGTGTG53320.12368922363438467No Hit
TGGGGT53130.12324847058692531No Hit
TGGGTT52900.12271492742421135No Hit
GGGTTG52770.1224133595496339No Hit
GGGGAG52650.1221349892038701No Hit
GTTTGT52610.12204219908861548No Hit
GGGTTT52180.12104470534962852No Hit
AGGGGG52080.12081273006149201No Hit
TGGGTG51730.12000081655301423No Hit
TTGGGG50890.1180522241326676No Hit
GTGGTG50780.11779705131571745No Hit
GGTTTG50650.11749548344113997No Hit
TTGTGG50500.11714752050893523No Hit
GTTTTT50430.11698513780723967No Hit
GGGGGC50390.11689234769198507No Hit
GTTTGG49470.1147581750411292No Hit
GGATGG49400.11459579233943366No Hit
TTGGTT48250.11192807652586387No Hit
GGCGGG48020.11139453336314988No Hit
TGTGGT47170.10942274341398961No Hit
GGGGGA46960.10893559530890293No Hit
GCGGGG45180.10480643518007314No Hit
CGTGGG44630.10353057109532236No Hit
GTGTAG44300.10276505264447189No Hit
GGGGTA43990.10204592925124871No Hit
TTTGGT43860.10174436137667126No Hit
GGAGGG43490.1008860528105662No Hit
GGGGCG43400.10067727505124334No Hit
GGTTTT43230.10028291706141129No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)