FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8614980
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG597480.6935361428581378No Hit
GGGGGT287430.3336397762966368No Hit
GGGTGG246210.2857928863444837No Hit
GCAATT242460.2814400033430141No Hit
GCGGGG241550.28038370373465754No Hit
GGTGGG232390.26975106152306794No Hit
GGGCGG227330.26387757139308504No Hit
GAGGGG223620.25957111914363123No Hit
GGGGCG221010.25654151257460844No Hit
TGGGGG220770.2562629280625144No Hit
AGGGGG218850.25403425196576196No Hit
GGGGTG217330.2522698833891663No Hit
GGGAGG213880.24826523102781436No Hit
GTGGGG210990.24491060919468183No Hit
GGGGGA201440.2338252671509394No Hit
CGGGGG200130.23230466002242606No Hit
GGCGGG193490.224597155187824No Hit
GGGGAG187900.2181084575936334No Hit
GGAGGG167900.1948930815857959No Hit
GGGGGC151700.17608862701944752No Hit
GGCCGG141650.16442290057550918No Hit
GGCTGG134820.15649484966883265No Hit
GTGGGT134490.15611179596470334No Hit
GGGGTT133670.15515996554838202No Hit
GGGCTG132870.1542313505080685No Hit
GCGGGT132780.15412688131603325No Hit
TGGGTG131410.15253662805949636No Hit
AGGGTG130680.1516892668352103No Hit
GGTGGT126650.14701136856963104No Hit
TGGTGG126640.14699976088162714No Hit
GGTTGG126260.14655866873747822No Hit
AGGGGT124520.14453893102479634No Hit
GGTCGG122390.14206649347996164No Hit
GGCGGT121070.14053427866344437No Hit
GCCGGG118590.1376555720384725No Hit
GGGCCG118180.13717965683031186No Hit
ACGGGG118100.13708679532628051No Hit
GGGTTG117360.13622782641399053No Hit
TTGGGG116500.13522956524565352No Hit
GTTGGG116430.13514831142962608No Hit
TGTGGG116260.13495098073355943No Hit
GCGGTG114070.13240889706070125No Hit
GGGTGT113820.1321187048606033No Hit
CTGGGG112090.13011057483592534No Hit
GTGAGG110950.1287872984034786No Hit
GGGGCT110830.12864800614743158No Hit
GGCAGG106830.12400493094586405No Hit
TGGCGG106580.12371473874576609No Hit
GGGGTA105470.12242628537733112No Hit
GGGGAT105430.12237985462531543No Hit
CGGGGT105300.12222895468126449No Hit
GCAGGG102480.11895558666415941No Hit
GAGGGT99850.11590276471912878No Hit
TGCGGG99300.11526434187891324No Hit
GGGGCC99110.1150437958068388No Hit
TCGGGG98750.11462591903869772No Hit
GGGTCG98450.11427768839858016No Hit
GTCGGG98240.11403392695049787No Hit
GGGTAG98070.11383659625443124No Hit
CGGGTG97830.11355801174233718No Hit
TGGGGT97550.11323299647822746No Hit
CGTGGG97430.11309370422218044No Hit
CCGGGG96980.1125713582620041No Hit
TAGGGG96920.11250171213398057No Hit
GCTGGG96770.1123275968139218No Hit
GGGGCA96240.11171238934971411No Hit
CGGTGG96180.11164274322169059No Hit
GCGGGA95020.11029625141323603No Hit
CGAGGG94090.10921673642887157No Hit
GTGCGG94040.10915869798885199No Hit
TGGGGA93540.10857831358865604No Hit
GGTAGG93310.1083113367645659No Hit
GGTGTG93070.10803275225247186No Hit
GTGGAG92890.10782381386840133No Hit
ATGGGG92520.10739432941225632No Hit
AGGTGG92240.1070693141481466No Hit
GCGCGG92070.10687198345207997No Hit
AGGGGA92050.10684876807607213No Hit
GTGGCG90760.10535137632356664No Hit
GTGGTG90220.10472456117135501No Hit
GGGCAG89870.10431829209121785No Hit
GGGCGT89820.10426025365119826No Hit
AGGCGG89510.10390041532307677No Hit
TGGGAG89210.10355218468295921No Hit
CGGGGA88560.1027976849627045No Hit
CGGCGG87810.10192710836241059No Hit
AAGGGG87800.10191550067440668No Hit
AGGGGC87300.10133511627421074No Hit
GGATGG87100.10110296251413235No Hit
GGAGGT86300.10017434747381887No Hit
CGGAGG86270.1001395244098071No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)