FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17874521
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG318630.17825932230575578No Hit
GTGGGG279300.1562559354737394No Hit
GGGTGG251030.14044012703892875No Hit
TGGGGG248280.1389016242728966No Hit
GTGTGG248200.13885686782879383No Hit
GGGGGT247970.13872819305199843No Hit
GGGGTG244650.13687080062173415No Hit
GTGGGT226490.12671108781040902No Hit
GGGGTT223980.12530685437668512No Hit
GGGTTG220700.12347184016847221No Hit
GGTGGG219790.12296273561680338No Hit
GTGGTG208520.11665767155382793No Hit
TGTGGG207800.11625486355690315No Hit
TGGGGT207630.1161597561131848No Hit
GGGTGT204840.11459887512510125No Hit
GTGTGT204460.11438628201561317No Hit
TTGGGG204400.1143527146825361No Hit
TTGTGG204260.1142743909053563No Hit
TGGTGG203660.11393871757458564No Hit
GTTGGG203630.11392193390804711No Hit
TTGTTG196990.11020714904751852No Hit
GGGTTT195440.10933999294302768No Hit
GTTTGG195330.1092784528323864No Hit
GGTTGG193680.1083553511727671No Hit
GTGTTG192270.10756651884545605No Hit
GGTGGT191970.10739868218007072No Hit
GGTTTG189140.1058154229699358No Hit
GGTGTG187190.10472448464493118No Hit
TGGTTG186870.10454545886852017No Hit
GTGGTT185900.10400278698377428No Hit
TTGGGT185380.10371187009710638No Hit
GTTTTG183070.10241952777363937No Hit
GTGTTT182790.10226288021927972No Hit
TTGTGT180960.10123907656042924No Hit
GGTTGT180720.10110480722812097No Hit
TGGGTG180670.10107683445055675No Hit
TGTTGG180600.10103767256196684No Hit
TTTTGT180390.10092018689619711No Hit
CGGGGG180110.10076353934183747No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)